SMTL ID : 4pva.1

Crystal structure of GH62 hydrolase from thermophilic fungus Scytalidium thermophilum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: V.27, S.28, T.29, G.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.28 Water bridges: A:G.286

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: R.100, N.120, P.140 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.120 Water bridges: A:R.100, A:R.100, A:R.100, A:R.100, A:P.140 Salt bridges: A:R.100 PO4.3: 5 residues within 4Å: Chain A: R.40, I.42, K.65, D.91, Y.97 10 PLIP interactions: 10 interactions with chain A Water bridges: A:R.40, A:R.40, A:T.63, A:T.63, A:K.65, A:E.67, A:G.68, A:N.70 Salt bridges: A:R.40, A:K.65 PO4.4: 3 residues within 4Å: Chain A: D.170, R.228, E.233 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.233 Water bridges: A:D.170, A:R.228 Salt bridges: A:R.228, A:K.237 PO4.5: 7 residues within 4Å: Chain A: K.46, E.222, R.251, S.294, H.295, Q.320, Y.330 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.222, A:S.294, A:Q.320, A:Y.330 Water bridges: A:K.46, A:K.46, A:E.222, A:E.222, A:R.251, A:R.251, A:Y.330 Salt bridges: A:K.46, A:R.251, A:H.295 PO4.6: 6 residues within 4Å: Chain A: D.169, L.178, H.180, R.260, I.261, D.262 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.261, A:D.262 Water bridges: A:D.169, A:L.178, A:Y.238 Salt bridges: A:H.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaur, A.P. et al., Functional and structural diversity in GH62 alpha-L-arabinofuranosidases from the thermophilic fungus Scytalidium thermophilum. Microb Biotechnol (2015)

Release Date

2014-11-19

Peptides

GH62 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GH62 hydrolase

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