SMTL ID : 4pwc.1

Phl p 4 I153V N158H variant, a glucose oxidase, 3.5 M NaBr soak

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 32 residues within 4Å: Chain A: V.81, R.82, S.83, G.84, G.85, H.86, D.87, Y.88, S.92, L.106, S.125, G.148, V.149, C.150, V.153, G.154, G.156, G.157, H.158, G.163, F.164, G.209, E.210, G.213, I.214, V.215, Y.436, N.438, Y.439, R.440, N.489 Ligands: BR.4 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:H.86, A:Y.88, A:V.153 Hydrogen bonds: A:V.81, A:S.83, A:S.83, A:G.84, A:G.85, A:H.86, A:D.87, A:D.87, A:D.87, A:S.92, A:S.92, A:S.125, A:V.149, A:G.154, A:G.157, A:H.158, A:F.164, A:F.164, A:E.210, A:V.215, A:V.215, A:Y.436, A:N.438, A:N.438, A:R.440, A:N.489 Water bridges: A:Y.88, A:L.91, A:E.210

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: E.89, E.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.338 Water bridges: A:Y.339 NA.3: 2 residues within 4Å: Chain A: K.430, N.431 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.430 Water bridges: A:K.430

68 x BR: BROMIDE ION(Non-covalent)(Non-functional Binders)

BR.4: 7 residues within 4Å: Chain A: L.129, G.148, V.149, C.150, V.153, H.158 Ligands: FAD.1 Ligand excluded by PLIP BR.5: 3 residues within 4Å: Chain A: A.409, A.411, A.412 Ligand excluded by PLIP BR.6: 2 residues within 4Å: Chain A: P.151, H.315 Ligand excluded by PLIP BR.7: 1 residues within 4Å: Chain A: D.244 Ligand excluded by PLIP BR.8: 2 residues within 4Å: Chain A: Q.255, K.291 Ligand excluded by PLIP BR.9: 2 residues within 4Å: Chain A: P.224, P.226 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain A: G.209, A.437, N.438, R.440 Ligand excluded by PLIP BR.11: 3 residues within 4Å: Chain A: C.281, K.282, P.299 Ligand excluded by PLIP BR.12: 1 residues within 4Å: Chain A: E.294 Ligand excluded by PLIP BR.13: 2 residues within 4Å: Chain A: C.302, E.304 Ligand excluded by PLIP BR.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP BR.15: 1 residues within 4Å: Chain A: A.118 Ligand excluded by PLIP BR.16: 2 residues within 4Å: Chain A: D.320, L.322 Ligand excluded by PLIP BR.17: 2 residues within 4Å: Chain A: R.41, Y.339 Ligand excluded by PLIP BR.18: 3 residues within 4Å: Chain A: K.233, N.303, F.313 Ligand excluded by PLIP BR.19: 2 residues within 4Å: Chain A: K.27, K.52 Ligand excluded by PLIP BR.20: 2 residues within 4Å: Chain A: K.193, K.194 Ligand excluded by PLIP BR.21: 3 residues within 4Å: Chain A: E.425, P.426, K.430 Ligand excluded by PLIP BR.22: 1 residues within 4Å: Chain A: K.182 Ligand excluded by PLIP BR.23: 2 residues within 4Å: Chain A: L.190, D.192 Ligand excluded by PLIP BR.24: 2 residues within 4Å: Chain A: P.286, S.289 Ligand excluded by PLIP BR.25: 3 residues within 4Å: Chain A: V.449, N.451, D.452 Ligand excluded by PLIP BR.26: 3 residues within 4Å: Chain A: M.305, S.306, Q.309 Ligand excluded by PLIP BR.27: 1 residues within 4Å: Chain A: P.364 Ligand excluded by PLIP BR.28: 3 residues within 4Å: Chain A: K.468, F.471, E.472 Ligand excluded by PLIP BR.29: 3 residues within 4Å: Chain A: K.233, I.234, S.235 Ligand excluded by PLIP BR.30: 2 residues within 4Å: Chain A: V.251, P.347 Ligand excluded by PLIP BR.31: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP BR.32: 3 residues within 4Å: Chain A: P.20, P.21, R.22 Ligand excluded by PLIP BR.33: 4 residues within 4Å: Chain A: L.327, N.328, R.329, Q.330 Ligand excluded by PLIP BR.34: 5 residues within 4Å: Chain A: Y.345, Q.346, Y.427, V.428, S.429 Ligand excluded by PLIP BR.35: 2 residues within 4Å: Chain A: S.379, G.393 Ligand excluded by PLIP BR.36: 3 residues within 4Å: Chain A: Y.32, P.33, K.52 Ligand excluded by PLIP BR.37: 3 residues within 4Å: Chain A: E.383, K.468, G.469 Ligand excluded by PLIP BR.38: 1 residues within 4Å: Chain A: K.138 Ligand excluded by PLIP BR.39: 3 residues within 4Å: Chain A: Q.97, R.446, E.490 Ligand excluded by PLIP BR.40: 3 residues within 4Å: Chain A: S.29, P.30, A.31 Ligand excluded by PLIP BR.41: 2 residues within 4Å: Chain A: V.243, N.358 Ligand excluded by PLIP BR.42: 3 residues within 4Å: Chain A: T.228, E.304, M.305 Ligand excluded by PLIP BR.43: 4 residues within 4Å: Chain A: Q.38, T.58, N.107, K.108 Ligand excluded by PLIP BR.44: 3 residues within 4Å: Chain A: P.432, R.433, K.465 Ligand excluded by PLIP BR.45: 3 residues within 4Å: Chain A: P.432, Q.464, K.468 Ligand excluded by PLIP BR.46: 4 residues within 4Å: Chain A: T.120, A.121, W.122, Q.219 Ligand excluded by PLIP BR.47: 2 residues within 4Å: Chain A: Q.66, L.190 Ligand excluded by PLIP BR.48: 3 residues within 4Å: Chain A: T.76, R.78, Y.486 Ligand excluded by PLIP BR.49: 3 residues within 4Å: Chain A: D.199, H.200, K.480 Ligand excluded by PLIP BR.50: 2 residues within 4Å: Chain A: W.45, R.94 Ligand excluded by PLIP BR.51: 2 residues within 4Å: Chain A: Q.97, R.446 Ligand excluded by PLIP BR.52: 1 residues within 4Å: Chain A: V.449 Ligand excluded by PLIP BR.53: 2 residues within 4Å: Chain A: A.258, D.259 Ligand excluded by PLIP BR.54: 2 residues within 4Å: Chain A: Y.456, K.460 Ligand excluded by PLIP BR.55: 2 residues within 4Å: Chain A: I.179, K.193 Ligand excluded by PLIP BR.56: 3 residues within 4Å: Chain A: R.74, H.75, T.76 Ligand excluded by PLIP BR.57: 1 residues within 4Å: Chain A: A.412 Ligand excluded by PLIP BR.58: 2 residues within 4Å: Chain A: Q.61, V.62 Ligand excluded by PLIP BR.59: 2 residues within 4Å: Chain A: K.194, S.195 Ligand excluded by PLIP BR.60: 3 residues within 4Å: Chain A: K.340, Y.421, D.443 Ligand excluded by PLIP BR.61: 2 residues within 4Å: Chain A: W.404, F.405 Ligand excluded by PLIP BR.62: 2 residues within 4Å: Chain A: N.431, P.432 Ligand excluded by PLIP BR.63: 2 residues within 4Å: Chain A: P.227, T.228 Ligand excluded by PLIP BR.64: 1 residues within 4Å: Chain A: Y.345 Ligand excluded by PLIP BR.65: 3 residues within 4Å: Chain A: G.37, S.46, K.334 Ligand excluded by PLIP BR.66: 1 residues within 4Å: Chain A: R.44 Ligand excluded by PLIP BR.67: 1 residues within 4Å: Chain A: G.393 Ligand excluded by PLIP BR.68: 1 residues within 4Å: Chain A: R.473 Ligand excluded by PLIP BR.69: 2 residues within 4Å: Chain A: N.451, D.452 Ligand excluded by PLIP BR.70: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP BR.71: 3 residues within 4Å: Chain A: C.14, R.74, H.75 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zafred, D. et al., Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction. Febs J. (2015)

Release Date

2014-04-02

Peptides

Pollen allergen Phl p 4.0202: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pollen allergen Phl p 4.0202

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