SMTL ID : 4pxc.1

The crystal structure of AtUAH in complex with (S)-hydroxyglycine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.92, D.103, G.104, H.208 Ligands: MN.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.103, A:H.208, H2O.1, H2O.6, H2O.8 MN.2: 6 residues within 4Å: Chain A: D.103, E.138, Q.211, H.402 Ligands: MN.1, HGY.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.103, A:E.138, A:H.402, H2O.4, H2O.6 MN.4: 5 residues within 4Å: Chain B: H.92, D.103, G.104, H.208 Ligands: MN.5 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.103, B:H.208, H2O.24, H2O.29, H2O.41 MN.5: 6 residues within 4Å: Chain B: D.103, E.138, Q.211, H.402 Ligands: MN.4, HGY.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.103, B:E.138, B:H.402, H2O.29

2 x HGY: (2S)-amino(hydroxy)ethanoic acid(Non-covalent)

HGY.3: 8 residues within 4Å: Chain A: E.138, R.307, A.376, Y.377, H.402 Chain B: H.244, N.294 Ligands: MN.2 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.377, A:Y.377, A:Y.377, B:N.294 Salt bridges: A:R.307, A:H.402, B:H.244 HGY.6: 8 residues within 4Å: Chain A: H.244, N.294 Chain B: E.138, R.307, A.376, Y.377, H.402 Ligands: MN.5 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Y.377, B:Y.377, B:Y.377, A:H.244, A:N.294 Water bridges: B:Q.211 Salt bridges: B:R.307, B:H.402, A:H.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, I. et al., Structural insights into the substrate specificity of (s)-ureidoglycolate amidohydrolase and its comparison with allantoate amidohydrolase. J.Mol.Biol. (2014)

Release Date

2014-07-23

Peptides

Ureidoglycolate hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ureidoglycolate hydrolase

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