SMTL ID : 4pxo.1

Crystal structure of Maleylacetoacetate isomerase from Methylobacteriu extorquens AM1 WITH BOUND MALONATE AND GSH (TARGET EFI-507068)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x MLA: MALONIC ACID(Non-covalent)

MLA.1: 11 residues within 4Å: Chain A: R.31, S.32, A.33, H.128, Y.131, V.132, P.133, R.136, F.201 Ligands: GSH.2, EDO.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.131 Hydrogen bonds: A:R.31, A:A.33 Water bridges: A:R.31, A:R.31 Salt bridges: A:R.31, A:H.128, A:R.136 MLA.6: 10 residues within 4Å: Chain B: R.31, S.32, A.33, H.128, Y.131, V.132, P.133, R.136 Ligands: GSH.7, EDO.12 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.131 Hydrogen bonds: B:A.33 Water bridges: B:R.31, B:R.31 Salt bridges: B:R.31, B:H.128, B:R.136

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.2: 19 residues within 4Å: Chain A: S.32, A.33, A.34, R.37, L.56, Q.61, G.73, A.74, V.75, P.76, Q.88, S.89, H.128, V.132, P.133, R.134 Chain B: C.125, D.126 Ligands: MLA.1 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.74 Hydrogen bonds: A:Q.61, A:V.75, A:V.75, A:Q.88, A:Q.88, A:S.89, A:R.134, A:R.134, A:R.134, B:D.126 Water bridges: A:R.37, A:L.90 Salt bridges: A:R.37, A:R.134 GSH.7: 20 residues within 4Å: Chain A: C.125, D.126 Chain B: S.32, A.33, A.34, R.37, L.56, Q.61, G.73, A.74, V.75, P.76, Q.88, S.89, H.128, V.132, P.133, R.134 Ligands: MLA.6, EDO.9 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.61, B:V.75, B:V.75, B:Q.88, B:Q.88, B:S.89, B:R.134, A:D.126 Water bridges: B:R.37, B:R.37, B:L.90 Salt bridges: B:R.37

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: R.177, F.178, E.217, A.220, L.221 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.177, A:E.217 EDO.4: 9 residues within 4Å: Chain A: R.31, S.32, A.33, Y.131, S.193, I.200, F.201, P.229 Ligands: MLA.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.131, A:G.197 EDO.5: 4 residues within 4Å: Chain A: Y.95, T.99 Chain B: E.109, R.111 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.109 Water bridges: B:R.111 EDO.8: 7 residues within 4Å: Chain A: L.130, F.153, N.156, A.157 Chain B: R.134, V.135, F.138 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.134, B:R.134, B:R.134 EDO.9: 4 residues within 4Å: Chain B: Q.72, V.132, R.134 Ligands: GSH.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.72, B:R.134 EDO.10: 7 residues within 4Å: Chain A: R.134, V.135, F.138 Chain B: L.130, F.153, N.156, A.157 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:R.134, B:N.156 Hydrogen bonds: B:F.153 EDO.11: 4 residues within 4Å: Chain B: N.43, L.44, A.223, R.226 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.44, B:R.226 Water bridges: B:A.223, B:A.223 EDO.12: 8 residues within 4Å: Chain B: R.31, S.32, A.33, Y.131, V.196, I.200, F.201 Ligands: MLA.6 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Y.131, B:G.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal structure of glutathione s-transferase zeta from Methylobacterium extorquens (TARGET EFI-507068). To be Published

Release Date

2014-04-09

Peptides

Maleylacetoacetate isomerase (Glutathione S-transferase): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Maleylacetoacetate isomerase (Glutathione S-transferase)

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