- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 24 x ZN: ZINC ION(Non-covalent)
ZN.2: 4 residues within 4Å:- Chain A: H.31, H.103, E.161, H.217
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:H.31, A:H.103, A:E.161, A:E.161, A:H.217
ZN.3: 1 residues within 4Å:- Chain A: H.26
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.26, H2O.3, H2O.11
ZN.4: 1 residues within 4Å:- Chain A: E.143
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.143, A:E.143, H2O.11
ZN.5: 1 residues within 4Å:- Chain A: D.174
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.174, A:D.174, H2O.2, H2O.11
ZN.6: 8 residues within 4Å:- Chain A: I.223, D.224
- Chain B: I.223, D.224
- Chain C: I.223, D.224
- Ligands: ZN.22, ZN.38
6 PLIP interactions:2 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A- Metal complexes: B:I.223, B:D.224, C:I.223, C:D.224, A:I.223, A:D.224
ZN.7: 1 residues within 4Å:- Chain A: E.144
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.144, A:E.144, H2O.12, H2O.12
ZN.8: 2 residues within 4Å:- Chain A: K.110, H.113
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.113, H2O.5
ZN.9: 1 residues within 4Å:- Chain A: H.113
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.113, H2O.11
ZN.18: 4 residues within 4Å:- Chain B: H.31, H.103, E.161, H.217
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:H.31, B:H.103, B:E.161, B:E.161, B:H.217
ZN.19: 1 residues within 4Å:- Chain B: H.26
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.26, H2O.14, H2O.22
ZN.20: 1 residues within 4Å:- Chain B: E.143
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.143, B:E.143, H2O.23
ZN.21: 1 residues within 4Å:- Chain B: D.174
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.174, B:D.174, H2O.13, H2O.23
ZN.22: 8 residues within 4Å:- Chain A: I.223, D.224
- Chain B: I.223, D.224
- Chain C: I.223, D.224
- Ligands: ZN.6, ZN.38
6 PLIP interactions:2 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B- Metal complexes: A:I.223, A:D.224, C:I.223, C:D.224, B:I.223, B:D.224
ZN.23: 1 residues within 4Å:- Chain B: E.144
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.144, B:E.144, H2O.23, H2O.23
ZN.24: 2 residues within 4Å:- Chain B: K.110, H.113
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.113, H2O.16
ZN.25: 1 residues within 4Å:- Chain B: H.113
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.113, H2O.23
ZN.34: 4 residues within 4Å:- Chain C: H.31, H.103, E.161, H.217
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:H.31, C:H.103, C:E.161, C:E.161, C:H.217
ZN.35: 1 residues within 4Å:- Chain C: H.26
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:H.26, H2O.25, H2O.33
ZN.36: 1 residues within 4Å:- Chain C: E.143
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.143, C:E.143, H2O.34
ZN.37: 1 residues within 4Å:- Chain C: D.174
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.174, C:D.174, H2O.24, H2O.34
ZN.38: 8 residues within 4Å:- Chain A: I.223, D.224
- Chain B: I.223, D.224
- Chain C: I.223, D.224
- Ligands: ZN.6, ZN.22
6 PLIP interactions:2 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A- Metal complexes: B:I.223, B:D.224, C:I.223, C:D.224, A:I.223, A:D.224
ZN.39: 1 residues within 4Å:- Chain C: E.144
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.144, C:E.144, H2O.34, H2O.34
ZN.40: 2 residues within 4Å:- Chain C: K.110, H.113
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.113, H2O.27
ZN.41: 1 residues within 4Å:- Chain C: H.113
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.113, H2O.34
- 9 x CL: CHLORIDE ION(Non-functional Binders)
CL.10: 5 residues within 4Å:- Chain A: P.135, P.158, A.159, I.223
- Chain C: N.228
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain A: P.63, Y.64, A.88
Ligand excluded by PLIPCL.12: 2 residues within 4Å:- Chain A: R.236, W.237
Ligand excluded by PLIPCL.26: 5 residues within 4Å:- Chain A: N.228
- Chain B: P.135, P.158, A.159, I.223
Ligand excluded by PLIPCL.27: 3 residues within 4Å:- Chain B: P.63, Y.64, A.88
Ligand excluded by PLIPCL.28: 2 residues within 4Å:- Chain B: R.236, W.237
Ligand excluded by PLIPCL.42: 5 residues within 4Å:- Chain B: N.228
- Chain C: P.135, P.158, A.159, I.223
Ligand excluded by PLIPCL.43: 3 residues within 4Å:- Chain C: P.63, Y.64, A.88
Ligand excluded by PLIPCL.44: 2 residues within 4Å:- Chain C: R.236, W.237
Ligand excluded by PLIP- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.13: 3 residues within 4Å:- Chain A: Y.23, T.39, I.55
No protein-ligand interaction detected (PLIP)EDO.14: 6 residues within 4Å:- Chain A: K.83, R.86, D.87, H.113, W.114
- Ligands: MES.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.83, A:D.87, A:H.113
- Water bridges: A:R.86, A:D.87
EDO.15: 6 residues within 4Å:- Chain A: K.68, E.69, Y.70, N.71, D.242, S.244
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.69, A:D.242, A:S.244
- Water bridges: A:N.71, A:N.71, A:R.209
EDO.16: 4 residues within 4Å:- Chain A: W.131, K.191, D.192
- Chain C: G.48
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.191, A:D.192
EDO.29: 3 residues within 4Å:- Chain B: Y.23, T.39, I.55
No protein-ligand interaction detected (PLIP)EDO.30: 6 residues within 4Å:- Chain B: K.83, R.86, D.87, H.113, W.114
- Ligands: MES.17
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.83, B:D.87, B:H.113
- Water bridges: B:R.86, B:D.87
EDO.31: 6 residues within 4Å:- Chain B: K.68, E.69, Y.70, N.71, D.242, S.244
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.69, B:D.242, B:S.244
- Water bridges: B:N.71, B:N.71, B:R.209
EDO.32: 4 residues within 4Å:- Chain A: G.48
- Chain B: W.131, K.191, D.192
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.191, B:D.192
EDO.45: 3 residues within 4Å:- Chain C: Y.23, T.39, I.55
No protein-ligand interaction detected (PLIP)EDO.46: 6 residues within 4Å:- Chain C: K.83, R.86, D.87, H.113, W.114
- Ligands: MES.33
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:K.83, C:D.87, C:H.113
- Water bridges: C:R.86, C:D.87
EDO.47: 6 residues within 4Å:- Chain C: K.68, E.69, Y.70, N.71, D.242, S.244
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:E.69, C:D.242, C:S.244
- Water bridges: C:N.71, C:N.71, C:R.209
EDO.48: 4 residues within 4Å:- Chain B: G.48
- Chain C: W.131, K.191, D.192
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.191, C:D.192
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a hypothetical protein (BACUNI_01602) from Bacteroides uniformis ATCC 8492 at 1.50 A resolution. To be published
- Release Date
- 2014-04-23
- Peptides
- Uncharacterized protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 24 x ZN: ZINC ION(Non-covalent)
- 9 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a hypothetical protein (BACUNI_01602) from Bacteroides uniformis ATCC 8492 at 1.50 A resolution. To be published
- Release Date
- 2014-04-23
- Peptides
- Uncharacterized protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A