SMTL ID : 4py6.2 (1 other biounit)

Crystal Structure of bromodomain of PFA0510w from Plasmodium Falciparum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x R78: 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide(Non-covalent)

R78.1: 10 residues within 4Å: Chain A: F.42, Y.43, V.48, N.53, I.54, I.58, F.104, N.105, N.111, I.114 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.48, A:N.53, A:I.54, A:I.54, A:I.58, A:F.104 Hydrogen bonds: A:N.53, A:N.105 Water bridges: A:D.51 pi-Stacking: A:Y.43 R78.4: 12 residues within 4Å: Chain B: F.42, Y.43, V.48, D.51, N.53, I.54, I.58, Y.62, F.104, N.105, N.111, I.114 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.42, B:Y.43, B:V.48, B:N.53, B:I.58, B:Y.62, B:F.104, B:I.114 Hydrogen bonds: B:N.105 pi-Stacking: B:Y.43

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.67, K.68, P.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.67 EDO.3: 5 residues within 4Å: Chain A: K.68, M.70, N.78, Y.84, D.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.68, A:N.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fonseca, M. et al., Crystal Structure of bromodomain of PFA0510w from Plasmodium Falciparum. To be Published

Release Date

2014-04-30

Peptides

Bromodomain protein, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Bromodomain protein, putative

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