SMTL ID : 4q0i.1

Deinococcus radiodurans BphP PAS-GAF D207A mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 6 residues within 4Å: Chain A: R.187, M.282, G.283, V.284, H.305, Q.307 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.284, A:Q.307 Hydrogen bonds: A:R.187, A:H.305 IPA.2: 3 residues within 4Å: Chain A: R.169, L.214, G.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.169 Water bridges: A:R.169 IPA.4: 6 residues within 4Å: Chain B: R.187, M.282, G.283, V.284, H.305, Q.307 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.284, B:Q.307 Hydrogen bonds: B:R.187, B:H.305 IPA.5: 3 residues within 4Å: Chain B: R.169, L.214, G.215 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.169 Water bridges: B:R.169

2 x LBV: 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC ACID(Covalent)

LBV.3: 24 residues within 4Å: Chain A: T.35, T.36, C.39, E.42, I.44, M.189, F.213, F.218, S.221, A.222, I.223, P.224, A.227, Y.231, R.269, T.271, S.272, H.275, Y.278, S.287, L.288, S.289, L.301, H.305 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:I.44, A:I.44, A:F.213, A:F.218, A:F.218, A:A.222, A:I.223, A:I.223, A:A.227, A:Y.231, A:H.275, A:Y.278, A:L.301 Hydrogen bonds: A:A.222, A:A.222, A:Y.231, A:S.272, A:H.275, A:S.287, A:S.289 Water bridges: A:R.269, A:R.269, A:L.288, A:L.288 Salt bridges: A:R.269, A:H.275 pi-Stacking: A:H.275 LBV.6: 24 residues within 4Å: Chain B: T.35, T.36, C.39, E.42, I.44, M.189, F.213, F.218, S.221, A.222, I.223, P.224, A.227, Y.231, R.269, T.271, S.272, H.275, Y.278, S.287, L.288, S.289, L.301, H.305 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:I.44, B:I.44, B:F.213, B:F.218, B:F.218, B:A.222, B:I.223, B:I.223, B:A.227, B:Y.231, B:H.275, B:Y.278, B:L.301 Hydrogen bonds: B:A.222, B:A.222, B:Y.231, B:Y.231, B:S.272, B:S.287, B:S.289 Water bridges: B:R.269, B:R.269, B:L.288, B:L.288 Salt bridges: B:R.269, B:H.275 pi-Stacking: B:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burgie, E.S. et al., Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion. J.Biol.Chem. (2014)

Release Date

2014-07-16

Peptides

Bacteriophytochrome: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bacteriophytochrome