SMTL ID : 4q1q.2 (1 other biounit)

Crystal structure of TibC-catalyzed hyper-glycosylated TibA55-350 fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

35 x 289: D-glycero-alpha-D-manno-heptopyranose(Post Translational Modification)

289.1: 4 residues within 4Å: Chain A: H.27, S.29, D.32 Ligands: 289.2 No protein-ligand interaction detected (PLIP) 289.2: 5 residues within 4Å: Chain A: H.27, Y.46, S.48 Ligands: 289.1, 289.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.27 289.3: 3 residues within 4Å: Chain A: R.19, G.20, S.41 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.41, A:I.60 289.4: 3 residues within 4Å: Chain A: A.30, S.49 Ligands: 289.6 No protein-ligand interaction detected (PLIP) 289.5: 4 residues within 4Å: Chain A: Y.46, S.67 Ligands: 289.2, 289.7 No protein-ligand interaction detected (PLIP) 289.6: 4 residues within 4Å: Chain A: S.49, S.68 Ligands: 289.4, 289.8 No protein-ligand interaction detected (PLIP) 289.7: 4 residues within 4Å: Chain A: H.65, H.84, S.86 Ligands: 289.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.65, A:H.84 289.8: 3 residues within 4Å: Chain A: S.87 Ligands: 289.6, 289.9 No protein-ligand interaction detected (PLIP) 289.9: 2 residues within 4Å: Chain A: S.106 Ligands: 289.8 No protein-ligand interaction detected (PLIP) 289.10: 8 residues within 4Å: Chain A: S.109, A.110, M.111, S.128, A.129, T.130, K.149 Ligands: 289.34 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.129, A:T.130, A:K.149 Water bridges: A:S.128 289.11: 3 residues within 4Å: Chain A: I.124, S.125 Ligands: 289.12 No protein-ligand interaction detected (PLIP) 289.12: 6 residues within 4Å: Chain A: Y.122, I.124, S.143, R.162 Ligands: 289.11, 289.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.162 289.13: 3 residues within 4Å: Chain A: S.144, D.163 Ligands: 289.12 No protein-ligand interaction detected (PLIP) 289.14: 4 residues within 4Å: Chain A: Y.160, R.162, S.181, Y.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.162 289.15: 5 residues within 4Å: Chain A: S.182, Y.200, G.201, S.219 Ligands: 289.19 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.219 289.16: 3 residues within 4Å: Chain A: G.183, S.185 Ligands: 289.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.183 289.17: 6 residues within 4Å: Chain A: S.203, A.204, T.205, S.222, T.224 Ligands: 289.16 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.204, A:S.222, A:S.222, A:T.224 289.18: 5 residues within 4Å: Chain A: Y.198, Y.200, S.218, S.219, Y.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.219, A:Y.237 289.19: 3 residues within 4Å: Chain A: S.219, D.239 Ligands: 289.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.239 289.20: 4 residues within 4Å: Chain A: I.60, S.79, N.98, G.99 No protein-ligand interaction detected (PLIP) 289.21: 3 residues within 4Å: Chain A: N.98, S.117 Ligands: 289.22 No protein-ligand interaction detected (PLIP) 289.22: 4 residues within 4Å: Chain A: S.117, S.136 Ligands: 289.21, 289.23 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.117 289.23: 4 residues within 4Å: Chain A: S.155, N.174, T.175 Ligands: 289.22 No protein-ligand interaction detected (PLIP) 289.24: 3 residues within 4Å: Chain A: N.174, S.193, N.211 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.174, A:S.193 289.25: 3 residues within 4Å: Chain A: N.211, S.230 Ligands: 289.26 No protein-ligand interaction detected (PLIP) 289.26: 6 residues within 4Å: Chain A: S.230, S.249, S.268, G.269 Ligands: 289.25, 289.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.230 289.27: 2 residues within 4Å: Chain A: S.268 Ligands: 289.26 No protein-ligand interaction detected (PLIP) 289.28: 1 residues within 4Å: Chain A: S.277 No protein-ligand interaction detected (PLIP) 289.29: 1 residues within 4Å: Chain A: S.131 No protein-ligand interaction detected (PLIP) 289.30: 3 residues within 4Å: Chain A: N.36, S.55 Ligands: 289.31 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.36 289.31: 4 residues within 4Å: Chain A: S.74, N.93, T.95 Ligands: 289.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.93, A:T.95, A:T.95 289.32: 6 residues within 4Å: Chain A: S.52, A.53, T.54, S.71, T.73 Ligands: 289.33 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.54, A:S.71 289.33: 8 residues within 4Å: Chain A: G.69, G.70, S.71, T.73, S.90, T.92 Ligands: 289.32, 289.34 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.69 289.34: 7 residues within 4Å: Chain A: S.90, A.91, T.92, S.109, M.111 Ligands: 289.10, 289.33 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.91, A:S.109 289.35: 5 residues within 4Å: Chain A: N.241, S.260, A.261, A.278, S.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.241, A:N.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, Q. et al., An iron-containing dodecameric heptosyltransferase family modifies bacterial autotransporters in pathogenesis. Cell Host Microbe (2014)

Release Date

2014-09-17

Peptides

Adhesin/invasin TibA autotransporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Adhesin/invasin TibA autotransporter

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