SMTL ID : 4q1v.1

Crystal structure of a putative dipeptidyl aminopeptidase IV (BACOVA_01349) from Bacteroides ovatus ATCC 8483 at 2.48 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

homo-dimer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: Y.494, Y.496, Q.502, R.513 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.502 Water bridges: A:Q.502, A:N.689, A:N.689 PEG.2: 3 residues within 4Å: Chain A: R.182, K.219, Y.232 No protein-ligand interaction detected (PLIP) PEG.4: 8 residues within 4Å: Chain B: G.383, H.384, Q.396, H.406, D.419, V.433, F.438, E.440 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.384, B:Q.396, B:D.419, B:F.438

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: D.263, D.623 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.263, A:D.263, A:D.623, H2O.1, H2O.1, H2O.13 MG.5: 4 residues within 4Å: Chain B: D.263, K.290, E.619, D.623 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.263, B:D.263, B:D.623, H2O.18, H2O.20, H2O.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative dipeptidyl aminopeptidase IV (BACOVA_01349) from Bacteroides ovatus ATCC 8483 at 2.48 A resolution. To be published

Release Date

2014-05-07

Peptides

putative dipeptidyl aminopeptidase IV: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

putative dipeptidyl aminopeptidase IV