SMTL ID : 4q27.1 (2 other biounits)

Galectin-1 in Complex with a Click-Activated N-Acetyllactosamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x TVS- TVV: 3-O-prop-2-yn-1-yl-beta-D-galactopyranose-(1-4)-prop-2-en-1-yl 2-(acetylamino)-2-deoxy-beta-D-glucopyranoside(Non-covalent)

TVS-TVV.1: 12 residues within 4Å: Chain A: V.33, H.46, N.48, R.50, H.54, D.56, V.61, C.62, N.63, W.70, E.73, R.75 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.50, A:R.50, A:E.73, A:R.75, A:H.46, A:R.50, A:N.63, A:E.73 Hydrophobic interactions: A:W.70 Water bridges: A:N.48, A:H.54, A:H.54, A:H.54 TVS-TVV.2: 11 residues within 4Å: Chain B: H.46, N.48, R.50, H.54, G.55, D.56, V.61, N.63, W.70, E.73, R.75 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.50, B:R.50, B:H.54, B:R.75, B:H.46, B:R.50, B:N.63, B:E.73 Water bridges: B:E.73, B:H.54, B:E.73 Hydrophobic interactions: B:W.70

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain B: N.12, K.14 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.12 Water bridges: B:K.14, A:K.129, A:K.129, A:K.129 Salt bridges: B:K.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grimm, C. et al., Galectin-1 in Complex with a Click-Activated N-Acetyllactosamine. To be Published

Release Date

2015-10-07

Peptides

Galectin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galectin-1

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