SMTL ID : 4q2b.1 (2 other biounits)

The crystal structure of an endo-1,4-D-glucanase from Pseudomonas putida KT2440

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.156, K.214, H.215 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.156, A:H.215 SO4.6: 4 residues within 4Å: Chain B: R.156, W.200, K.214, H.215 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.156, B:K.214, B:H.215

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 6 residues within 4Å: Chain A: E.34, W.75, A.93, D.95, Y.161, R.225 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.34, A:D.95, A:R.225 Water bridges: A:T.32, A:E.34, A:E.34, A:Y.161, A:R.225, A:R.225

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: D.18, R.57, W.58, N.61, N.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.18, A:N.61, A:N.62 FMT.4: 1 residues within 4Å: Chain A: R.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.20 FMT.5: 5 residues within 4Å: Chain A: L.105, Q.121, R.169, D.172, V.173 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.121, A:R.169, A:R.169 FMT.7: 2 residues within 4Å: Chain B: R.301, D.327 No protein-ligand interaction detected (PLIP) FMT.8: 3 residues within 4Å: Chain B: Q.121, R.169, V.173 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.121, B:R.169, B:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of an endo-1,4-D-glucanase from Pseudomonas putida KT2440. To be Published

Release Date

2014-06-25

Peptides

Endo-1,4-beta-D-glucanase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Endo-1,4-beta-D-glucanase

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