SMTL ID : 4q2w.1

Crystal Structure of pneumococcal peptidoglycan hydrolase LytB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: D.84, F.85, I.86, Y.88, K.120, Y.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.86, A:Y.122 GOL.2: 7 residues within 4Å: Chain A: G.213, I.214, T.215, W.241, Y.246, E.264, Y.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.213, A:T.215, A:Y.246, A:Y.246 GOL.3: 4 residues within 4Å: Chain A: A.146, T.147, N.148, K.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.148, A:K.176 Water bridges: A:N.148 GOL.4: 3 residues within 4Å: Chain A: W.199, R.201, K.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.161, A:R.201, A:R.201, A:K.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bai, X.H. et al., Structure of pneumococcal peptidoglycan hydrolase LytB reveals insights into the bacterial cell wall remodeling and pathogenesis. J.Biol.Chem. (2014)

Release Date

2014-07-16

Peptides

Putative endo-beta-N-acetylglucosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative endo-beta-N-acetylglucosaminidase