- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 7 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 2 residues within 4Å:- Chain A: R.171, D.217
Ligand excluded by PLIPCL.3: 3 residues within 4Å:- Chain A: V.325, M.340
- Chain B: R.39
Ligand excluded by PLIPCL.10: 1 residues within 4Å:- Chain B: A.293
Ligand excluded by PLIPCL.18: 2 residues within 4Å:- Chain C: R.171, D.217
Ligand excluded by PLIPCL.19: 2 residues within 4Å:- Chain C: R.115
- Chain D: R.91
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain D: R.171, D.192
Ligand excluded by PLIPCL.24: 1 residues within 4Å:- Chain D: S.296
Ligand excluded by PLIP- 15 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 5 residues within 4Å:- Chain A: L.89, R.171, D.219, L.220, A.223
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.171, A:R.171
- Water bridges: A:L.220, A:A.223
GOL.5: 6 residues within 4Å:- Chain A: R.19, S.21, P.29, P.30, H.32, E.59
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.59
- Water bridges: A:A.22, A:E.59
GOL.6: 7 residues within 4Å:- Chain A: E.68, R.69, A.70, P.71, L.187, A.188, R.216
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.68, A:R.216
- Water bridges: A:L.187, A:A.188, A:A.188
GOL.7: 7 residues within 4Å:- Chain A: R.51, T.229, T.230
- Chain B: Y.103, A.104, G.105
- Ligands: MES.9
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.51, A:R.51, A:T.230, B:A.104
- Water bridges: A:T.230
GOL.11: 7 residues within 4Å:- Chain B: R.256, I.366, E.367, D.368
- Chain C: G.10, S.251, L.252
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:G.10, C:S.251, B:I.366, B:D.368
GOL.12: 5 residues within 4Å:- Chain B: E.68, R.69, L.187, A.188, R.216
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.187, B:R.216
- Water bridges: B:A.188, B:G.190
GOL.13: 5 residues within 4Å:- Chain A: A.104, G.105, G.108
- Chain B: T.229, T.230
2 PLIP interactions:2 interactions with chain B- Water bridges: B:T.230, B:T.230
GOL.14: 7 residues within 4Å:- Chain B: R.19, P.20, S.21, P.29, P.30, H.32, E.59
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain B- Water bridges: D:A.22
- Hydrogen bonds: B:S.21, B:E.59
GOL.15: 6 residues within 4Å:- Chain B: V.277, H.278, Y.279, E.284, H.285, P.286
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.278, B:Y.279, B:Y.279
GOL.16: 5 residues within 4Å:- Chain B: H.166, G.169, A.170, R.171, D.192
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.169, B:D.192
GOL.20: 6 residues within 4Å:- Chain C: E.68, R.69, P.71, L.187, A.188, R.216
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.216, C:R.216
- Water bridges: C:E.68, C:A.188
GOL.25: 6 residues within 4Å:- Chain D: E.68, R.69, A.70, L.187, A.188, R.216
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:R.216, D:R.216
- Water bridges: D:E.68, D:A.188, D:G.190
GOL.26: 5 residues within 4Å:- Chain C: A.104, G.105, G.108
- Chain D: T.229, T.230
1 PLIP interactions:1 interactions with chain C- Water bridges: C:Y.103
GOL.27: 5 residues within 4Å:- Chain D: L.89, R.171, D.219, L.220, A.223
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.171, D:R.171
GOL.28: 7 residues within 4Å:- Chain B: E.38
- Chain D: R.18, R.19, P.20, S.21, G.25, D.26
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.18, D:S.21, D:G.25
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cao, H. et al., Structural dynamics of a methionine gamma-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate. Struct Dyn (2016)
- Release Date
- 2014-05-07
- Peptides
- cystathione gamma lyase CalE6: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 15 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cao, H. et al., Structural dynamics of a methionine gamma-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate. Struct Dyn (2016)
- Release Date
- 2014-05-07
- Peptides
- cystathione gamma lyase CalE6: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D