SMTL ID : 4q32.1

Crystal Structure of Inosine 5'-monophosphate Dehydrogenase from Clostridium perfringens Complexed with IMP and C91

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 22 residues within 4Å: Chain A: A.50, M.52, N.154, G.179, S.180, I.181, C.182, T.184, D.215, G.216, G.217, M.236, M.237, G.238, S.239, Y.262, G.264, M.265, G.266, E.290, G.291 Ligands: C91.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.154, A:S.180, A:D.215, A:G.217, A:G.238, A:S.239, A:Y.262, A:M.265, A:G.266, A:S.267, A:E.290 Water bridges: A:G.177, A:G.179, A:I.240 IMP.4: 22 residues within 4Å: Chain B: A.50, M.52, N.154, G.179, S.180, I.181, C.182, T.184, D.215, G.216, G.217, M.237, G.238, S.239, Y.262, G.264, M.265, G.266, S.267, E.290, G.291 Ligands: C91.3 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:N.154, B:S.180, B:D.215, B:G.217, B:G.238, B:S.239, B:Y.262, B:M.265, B:G.266, B:S.267, B:E.290 Water bridges: B:G.177, B:G.179 IMP.6: 24 residues within 4Å: Chain C: A.50, M.52, N.154, K.173, G.179, S.180, I.181, C.182, T.184, D.215, G.216, G.217, M.236, M.237, G.238, S.239, Y.262, G.264, M.265, G.266, S.267, E.290, G.291 Ligands: C91.7 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:N.154, C:K.173, C:S.180, C:G.217, C:G.238, C:S.239, C:M.265, C:G.266, C:E.290 Water bridges: C:K.173, C:K.173, C:G.177, C:G.179, C:G.216, C:G.216, C:L.218, C:L.218, C:I.240 IMP.8: 22 residues within 4Å: Chain D: A.50, M.52, N.154, G.179, S.180, I.181, C.182, D.215, G.216, G.217, M.236, M.237, G.238, S.239, Y.262, G.264, M.265, G.266, S.267, E.290, G.291 Ligands: C91.5 17 PLIP interactions: 17 interactions with chain D Hydrogen bonds: D:N.154, D:S.180, D:D.215, D:G.217, D:G.238, D:S.239, D:M.265, D:G.266, D:S.267, D:E.290 Water bridges: D:K.173, D:G.177, D:G.179, D:G.216, D:G.216, D:G.217, D:L.218

4 x C91: N-(naphthalen-2-yl)-2-[2-(pyridin-2-yl)-1H-benzimidazol-1-yl]acetamide(Non-covalent)

C91.2: 13 residues within 4Å: Chain A: A.127, T.184, M.265, G.266, M.271, E.290 Chain C: V.26, L.27, P.28, S.315, G.318, Y.319 Ligands: IMP.1 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:A.127, C:L.27, C:P.28, C:Y.319 Hydrogen bonds: A:E.290 Water bridges: A:A.127 C91.3: 13 residues within 4Å: Chain A: V.26, L.27, P.28, S.315, G.318, Y.319 Chain B: A.127, T.184, M.265, G.266, M.271, E.290 Ligands: IMP.4 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:A.127, A:L.27, A:P.28, A:Y.319 Hydrogen bonds: B:E.290 C91.5: 14 residues within 4Å: Chain B: V.26, L.27, P.28, S.315, G.318, Y.319 Chain D: A.127, H.128, T.184, M.265, G.266, M.271, E.290 Ligands: IMP.8 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:L.27, B:P.28, B:Y.319, D:H.128 Hydrogen bonds: D:E.290 C91.7: 12 residues within 4Å: Chain C: A.127, H.128, T.184, M.265, G.266, M.271, E.290 Chain D: P.28, S.315, G.318, Y.319 Ligands: IMP.6 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:P.28, D:Y.319, C:A.127, C:H.128 Hydrogen bonds: C:E.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Inosine 5'-monophosphate Dehydrogenase from Clostridium perfringens Complexed with IMP and C91. To be Published

Release Date

2014-07-09

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Inosine-5'-monophosphate dehydrogenase

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