SMTL ID : 4q36.1

The crystal structure of acyltransferase in complex with octanoyl-CoA and teicoplanin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: A.106, K.107, R.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.107 Salt bridges: A:K.107, A:R.109 SO4.2: 3 residues within 4Å: Chain A: G.201, K.202, D.203 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.202, A:D.203, A:D.203 SO4.3: 2 residues within 4Å: Chain A: R.232, R.245 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.232, A:R.245

1 x GCS: 2-amino-2-deoxy-beta-D-glucopyranose(Non-covalent)

GCS.4: 8 residues within 4Å: Chain A: M.176, W.178, W.179, H.211, V.212, S.250, F.296 Ligands: CO8.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.211 Water bridges: A:Q.157, A:W.179, A:L.210, A:V.212, A:S.250

1 x CO8: OCTANOYL-COENZYME A(Non-covalent)

CO8.5: 24 residues within 4Å: Chain A: R.193, L.210, H.211, V.212, E.214, G.217, P.218, L.219, S.250, S.251, W.252, M.253, L.254, S.266, N.267, I.268, W.275, F.296, V.297, S.312, S.313, L.314, E.315 Ligands: GCS.4 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.210, A:V.212, A:V.212, A:L.254, A:W.275, A:F.296 Hydrogen bonds: A:V.212, A:V.212, A:L.219, A:N.267, A:N.267, A:I.268, A:F.296, A:S.312, A:S.313, A:S.313, A:L.314 Water bridges: A:E.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, S.Y. et al., Multiple complexes of long aliphatic N-acyltransferases lead to synthesis of 2,6-diacylated/2-acyl-substituted glycopeptide antibiotics, effectively killing vancomycin-resistant enterococcus. J.Am.Chem.Soc. (2014)

Release Date

2014-09-10

Peptides

Putative uncharacterized protein tcp24: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein tcp24

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