SMTL ID : 4q46.2 (1 other biounit)

The second structure of Influenza B PB2 cap-binding domain complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 11 residues within 4Å: Chain A: Q.12, F.14, R.21, K.28, G.44, W.46, E.50, K.65, F.93, S.118, M.120 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.21, A:S.118 Water bridges: A:R.13, A:K.28, A:G.44, A:G.44, A:W.46, A:F.93, A:M.120 Salt bridges: A:K.28, A:K.28, A:E.50 pi-Stacking: A:W.46, A:W.46, A:W.46 pi-Cation interactions: A:W.46, A:W.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., The crystal structure of the PB2 cap-binding domain of influenza B virus reveals a novel cap recognition mechanism. J.Biol.Chem. (2015)

Release Date

2015-02-25

Peptides

Polymerase basic protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Polymerase basic protein 2

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