- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- hetero-15-15-15-15-mer
- Ligands
- 15 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 30 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
HEZ.2: 6 residues within 4Å:- Chain A: N.154, Y.189, G.190, S.191
- Chain E: N.154, G.190
Ligand excluded by PLIPHEZ.3: 7 residues within 4Å:- Chain A: Y.175, Q.178
- Chain E: T.88, I.89, D.116, T.117
- Chain G: T.234
Ligand excluded by PLIPHEZ.16: 6 residues within 4Å:- Chain E: N.154, Y.189, G.190, S.191
- Chain I: N.154, G.190
Ligand excluded by PLIPHEZ.17: 7 residues within 4Å:- Chain E: Y.175, Q.178
- Chain I: T.88, I.89, D.116, T.117
- Chain K: T.234
Ligand excluded by PLIPHEZ.30: 6 residues within 4Å:- Chain I: N.154, Y.189, G.190, S.191
- Chain M: N.154, G.190
Ligand excluded by PLIPHEZ.31: 7 residues within 4Å:- Chain I: Y.175, Q.178
- Chain M: T.88, I.89, D.116, T.117
- Chain O: T.234
Ligand excluded by PLIPHEZ.44: 6 residues within 4Å:- Chain M: N.154, Y.189, G.190, S.191
- Chain Q: N.154, G.190
Ligand excluded by PLIPHEZ.45: 7 residues within 4Å:- Chain M: Y.175, Q.178
- Chain Q: T.88, I.89, D.116, T.117
- Chain S: T.234
Ligand excluded by PLIPHEZ.58: 6 residues within 4Å:- Chain A: N.154, G.190
- Chain Q: N.154, Y.189, G.190, S.191
Ligand excluded by PLIPHEZ.59: 7 residues within 4Å:- Chain A: T.88, I.89, D.116, T.117
- Chain C: T.234
- Chain Q: Y.175, Q.178
Ligand excluded by PLIPHEZ.72: 6 residues within 4Å:- Chain U: N.154, Y.189, G.190, S.191
- Chain Y: N.154, G.190
Ligand excluded by PLIPHEZ.73: 7 residues within 4Å:- Chain 0: T.234
- Chain U: Y.175, Q.178
- Chain Y: T.88, I.89, D.116, T.117
Ligand excluded by PLIPHEZ.86: 6 residues within 4Å:- Chain 2: N.154, G.190
- Chain Y: N.154, Y.189, G.190, S.191
Ligand excluded by PLIPHEZ.87: 7 residues within 4Å:- Chain 2: T.88, I.89, D.116, T.117
- Chain 4: T.234
- Chain Y: Y.175, Q.178
Ligand excluded by PLIPHEZ.100: 6 residues within 4Å:- Chain 2: N.154, Y.189, G.190, S.191
- Chain 6: N.154, G.190
Ligand excluded by PLIPHEZ.101: 7 residues within 4Å:- Chain 2: Y.175, Q.178
- Chain 6: T.88, I.89, D.116, T.117
- Chain 8: T.234
Ligand excluded by PLIPHEZ.114: 6 residues within 4Å:- Chain 6: N.154, Y.189, G.190, S.191
- Chain a: N.154, G.190
Ligand excluded by PLIPHEZ.115: 7 residues within 4Å:- Chain 6: Y.175, Q.178
- Chain a: T.88, I.89, D.116, T.117
- Chain c: T.234
Ligand excluded by PLIPHEZ.128: 6 residues within 4Å:- Chain U: N.154, G.190
- Chain a: N.154, Y.189, G.190, S.191
Ligand excluded by PLIPHEZ.129: 7 residues within 4Å:- Chain U: T.88, I.89, D.116, T.117
- Chain W: T.234
- Chain a: Y.175, Q.178
Ligand excluded by PLIPHEZ.142: 6 residues within 4Å:- Chain e: N.154, Y.189, G.190, S.191
- Chain i: N.154, G.190
Ligand excluded by PLIPHEZ.143: 7 residues within 4Å:- Chain e: Y.175, Q.178
- Chain i: T.88, I.89, D.116, T.117
- Chain k: T.234
Ligand excluded by PLIPHEZ.156: 6 residues within 4Å:- Chain i: N.154, Y.189, G.190, S.191
- Chain m: N.154, G.190
Ligand excluded by PLIPHEZ.157: 7 residues within 4Å:- Chain i: Y.175, Q.178
- Chain m: T.88, I.89, D.116, T.117
- Chain o: T.234
Ligand excluded by PLIPHEZ.170: 6 residues within 4Å:- Chain m: N.154, Y.189, G.190, S.191
- Chain q: N.154, G.190
Ligand excluded by PLIPHEZ.171: 7 residues within 4Å:- Chain m: Y.175, Q.178
- Chain q: T.88, I.89, D.116, T.117
- Chain s: T.234
Ligand excluded by PLIPHEZ.184: 6 residues within 4Å:- Chain q: N.154, Y.189, G.190, S.191
- Chain u: N.154, G.190
Ligand excluded by PLIPHEZ.185: 7 residues within 4Å:- Chain q: Y.175, Q.178
- Chain u: T.88, I.89, D.116, T.117
- Chain w: T.234
Ligand excluded by PLIPHEZ.198: 6 residues within 4Å:- Chain e: N.154, G.190
- Chain u: N.154, Y.189, G.190, S.191
Ligand excluded by PLIPHEZ.199: 7 residues within 4Å:- Chain e: T.88, I.89, D.116, T.117
- Chain g: T.234
- Chain u: Y.175, Q.178
Ligand excluded by PLIP- 15 x NA: SODIUM ION(Non-functional Binders)
NA.4: 4 residues within 4Å:- Chain A: T.26, A.27, S.29, N.68
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.29, A:N.68, A:N.68
NA.18: 4 residues within 4Å:- Chain E: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:T.26, E:A.27, E:S.29, E:N.68
NA.32: 4 residues within 4Å:- Chain I: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain I- Hydrogen bonds: I:T.26, I:S.29, I:N.68, I:N.68
NA.46: 4 residues within 4Å:- Chain M: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain M- Hydrogen bonds: M:T.26, M:T.26, M:S.29, M:N.68
NA.60: 4 residues within 4Å:- Chain Q: T.26, A.27, S.29, N.68
3 PLIP interactions:3 interactions with chain Q- Hydrogen bonds: Q:S.29, Q:N.68, Q:N.68
NA.74: 4 residues within 4Å:- Chain U: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain U- Hydrogen bonds: U:T.26, U:S.29, U:N.68, U:N.68
NA.88: 4 residues within 4Å:- Chain Y: T.26, A.27, S.29, N.68
3 PLIP interactions:3 interactions with chain Y- Hydrogen bonds: Y:S.29, Y:S.29, Y:N.68
NA.102: 4 residues within 4Å:- Chain 2: T.26, A.27, S.29, N.68
3 PLIP interactions:3 interactions with chain 2- Hydrogen bonds: 2:A.27, 2:S.29, 2:N.68
NA.116: 4 residues within 4Å:- Chain 6: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain 6- Hydrogen bonds: 6:T.26, 6:A.27, 6:S.29, 6:N.68
NA.130: 4 residues within 4Å:- Chain a: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain a- Hydrogen bonds: a:T.26, a:T.26, a:S.29, a:N.68
NA.144: 4 residues within 4Å:- Chain e: T.26, A.27, S.29, N.68
3 PLIP interactions:3 interactions with chain e- Hydrogen bonds: e:S.29, e:S.29, e:N.68
NA.158: 4 residues within 4Å:- Chain i: T.26, A.27, S.29, N.68
3 PLIP interactions:3 interactions with chain i- Hydrogen bonds: i:T.26, i:S.29, i:N.68
NA.172: 4 residues within 4Å:- Chain m: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain m- Hydrogen bonds: m:T.26, m:A.27, m:S.29, m:N.68
NA.186: 4 residues within 4Å:- Chain q: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain q- Hydrogen bonds: q:T.26, q:T.26, q:S.29, q:N.68
NA.200: 4 residues within 4Å:- Chain u: T.26, A.27, S.29, N.68
3 PLIP interactions:3 interactions with chain u- Hydrogen bonds: u:T.26, u:S.29, u:N.68
- 75 x CA: CALCIUM ION(Non-covalent)
CA.5: 4 residues within 4Å:- Chain A: T.33, S.34, S.58, I.61
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.33, A:S.34, A:S.58, A:I.61, H2O.10, H2O.283
CA.6: 4 residues within 4Å:- Chain A: V.41, L.44
- Chain D: K.63, A.65
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: D:K.63, D:A.65, A:L.44, H2O.6, H2O.6
CA.7: 4 residues within 4Å:- Chain A: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:V.246, A:N.248, H2O.6, H2O.6
CA.11: 1 residues within 4Å:- Chain B: E.55
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.55, H2O.15
CA.13: 7 residues within 4Å:- Chain G: T.4
- Chain K: T.4
- Chain O: T.4
- Ligands: CA.27, CA.41, CA.55, CA.69
1 PLIP interactions:1 interactions with chain K- Metal complexes: K:T.4
CA.19: 4 residues within 4Å:- Chain E: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:T.33, E:S.34, E:S.58, E:I.61, H2O.40
CA.20: 4 residues within 4Å:- Chain E: V.41, L.44
- Chain H: K.63, A.65
5 PLIP interactions:2 interactions with chain H, 1 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: H:K.63, H:A.65, E:L.44, H2O.36, H2O.36
CA.21: 4 residues within 4Å:- Chain E: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:V.246, E:N.248, H2O.36, H2O.37
CA.25: 1 residues within 4Å:- Chain F: E.55
2 PLIP interactions:1 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:E.55, H2O.46
CA.27: 7 residues within 4Å:- Chain K: T.4
- Chain O: T.4
- Chain S: T.4
- Ligands: CA.13, CA.41, CA.55, CA.69
1 PLIP interactions:1 interactions with chain O- Metal complexes: O:T.4
CA.33: 4 residues within 4Å:- Chain I: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:T.33, I:S.34, I:S.58, I:I.61, H2O.70
CA.34: 4 residues within 4Å:- Chain I: V.41, L.44
- Chain L: K.63, A.65
5 PLIP interactions:2 interactions with chain L, 1 interactions with chain I, 2 Ligand-Water interactions- Metal complexes: L:K.63, L:A.65, I:L.44, H2O.66, H2O.66
CA.35: 4 residues within 4Å:- Chain I: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain I, 2 Ligand-Water interactions- Metal complexes: I:V.246, I:N.248, H2O.67, H2O.67
CA.39: 1 residues within 4Å:- Chain J: E.55
2 PLIP interactions:1 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:E.55, H2O.76
CA.41: 7 residues within 4Å:- Chain C: T.4
- Chain O: T.4
- Chain S: T.4
- Ligands: CA.13, CA.27, CA.55, CA.69
1 PLIP interactions:1 interactions with chain S- Metal complexes: S:T.4
CA.47: 4 residues within 4Å:- Chain M: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain M, 1 Ligand-Water interactions- Metal complexes: M:T.33, M:S.34, M:S.58, M:I.61, H2O.100
CA.48: 4 residues within 4Å:- Chain M: V.41, L.44
- Chain P: K.63, A.65
5 PLIP interactions:1 interactions with chain M, 2 interactions with chain P, 2 Ligand-Water interactions- Metal complexes: M:L.44, P:K.63, P:A.65, H2O.96, H2O.97
CA.49: 4 residues within 4Å:- Chain M: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain M, 2 Ligand-Water interactions- Metal complexes: M:V.246, M:N.248, H2O.97, H2O.97
CA.53: 1 residues within 4Å:- Chain N: E.55
2 PLIP interactions:1 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: N:E.55, H2O.106
CA.55: 7 residues within 4Å:- Chain C: T.4
- Chain G: T.4
- Chain S: T.4
- Ligands: CA.13, CA.27, CA.41, CA.69
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.4
CA.61: 4 residues within 4Å:- Chain Q: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: Q:T.33, Q:S.34, Q:S.58, Q:I.61, H2O.130
CA.62: 4 residues within 4Å:- Chain Q: V.41, L.44
- Chain T: K.63, A.65
5 PLIP interactions:1 interactions with chain Q, 2 interactions with chain T, 2 Ligand-Water interactions- Metal complexes: Q:L.44, T:K.63, T:A.65, H2O.127, H2O.127
CA.63: 4 residues within 4Å:- Chain Q: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain Q, 2 Ligand-Water interactions- Metal complexes: Q:V.246, Q:N.248, H2O.127, H2O.127
CA.67: 3 residues within 4Å:- Chain R: E.55
- Ligands: CA.137
- Chain b: E.55
4 PLIP interactions:1 interactions with chain R, 1 interactions with chain b, 2 Ligand-Water interactions- Metal complexes: R:E.55, b:E.55, H2O.136, H2O.286
CA.69: 7 residues within 4Å:- Chain C: T.4
- Chain G: T.4
- Chain K: T.4
- Ligands: CA.13, CA.27, CA.41, CA.55
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:T.4
CA.75: 4 residues within 4Å:- Chain U: T.33, S.34, S.58, I.61
6 PLIP interactions:4 interactions with chain U, 2 Ligand-Water interactions- Metal complexes: U:T.33, U:S.34, U:S.58, U:I.61, H2O.132, H2O.160
CA.76: 4 residues within 4Å:- Chain U: V.41, L.44
- Chain X: K.63, A.65
5 PLIP interactions:1 interactions with chain U, 2 interactions with chain X, 2 Ligand-Water interactions- Metal complexes: U:L.44, X:K.63, X:A.65, H2O.157, H2O.157
CA.77: 4 residues within 4Å:- Chain U: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain U, 2 Ligand-Water interactions- Metal complexes: U:V.246, U:N.248, H2O.157, H2O.157
CA.81: 1 residues within 4Å:- Chain V: E.55
2 PLIP interactions:1 interactions with chain V, 1 Ligand-Water interactions- Metal complexes: V:E.55, H2O.166
CA.83: 7 residues within 4Å:- Chain 0: T.4
- Chain 4: T.4
- Chain 8: T.4
- Ligands: CA.97, CA.111, CA.125, CA.139
1 PLIP interactions:1 interactions with chain 4- Metal complexes: 4:T.4
CA.89: 4 residues within 4Å:- Chain Y: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain Y, 1 Ligand-Water interactions- Metal complexes: Y:T.33, Y:S.34, Y:S.58, Y:I.61, H2O.190
CA.90: 4 residues within 4Å:- Chain 1: K.63, A.65
- Chain Y: V.41, L.44
5 PLIP interactions:1 interactions with chain Y, 2 interactions with chain 1, 2 Ligand-Water interactions- Metal complexes: Y:L.44, 1:K.63, 1:A.65, H2O.187, H2O.187
CA.91: 4 residues within 4Å:- Chain Y: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain Y, 2 Ligand-Water interactions- Metal complexes: Y:V.246, Y:N.248, H2O.187, H2O.187
CA.95: 1 residues within 4Å:- Chain Z: E.55
2 PLIP interactions:1 interactions with chain Z, 1 Ligand-Water interactions- Metal complexes: Z:E.55, H2O.196
CA.97: 7 residues within 4Å:- Chain 4: T.4
- Chain 8: T.4
- Ligands: CA.83, CA.111, CA.125, CA.139
- Chain c: T.4
1 PLIP interactions:1 interactions with chain 8- Metal complexes: 8:T.4
CA.103: 4 residues within 4Å:- Chain 2: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain 2, 1 Ligand-Water interactions- Metal complexes: 2:T.33, 2:S.34, 2:S.58, 2:I.61, H2O.220
CA.104: 4 residues within 4Å:- Chain 2: V.41, L.44
- Chain 5: K.63, A.65
5 PLIP interactions:2 interactions with chain 5, 1 interactions with chain 2, 2 Ligand-Water interactions- Metal complexes: 5:K.63, 5:A.65, 2:L.44, H2O.217, H2O.217
CA.105: 4 residues within 4Å:- Chain 2: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain 2, 2 Ligand-Water interactions- Metal complexes: 2:V.246, 2:N.248, H2O.217, H2O.217
CA.109: 1 residues within 4Å:- Chain 3: E.55
2 PLIP interactions:1 interactions with chain 3, 1 Ligand-Water interactions- Metal complexes: 3:E.55, H2O.226
CA.111: 7 residues within 4Å:- Chain 8: T.4
- Chain W: T.4
- Ligands: CA.83, CA.97, CA.125, CA.139
- Chain c: T.4
1 PLIP interactions:1 interactions with chain c- Metal complexes: c:T.4
CA.117: 4 residues within 4Å:- Chain 6: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain 6, 1 Ligand-Water interactions- Metal complexes: 6:T.33, 6:S.34, 6:S.58, 6:I.61, H2O.250
CA.118: 4 residues within 4Å:- Chain 6: V.41, L.44
- Chain 9: K.63, A.65
5 PLIP interactions:1 interactions with chain 6, 2 interactions with chain 9, 2 Ligand-Water interactions- Metal complexes: 6:L.44, 9:K.63, 9:A.65, H2O.247, H2O.247
CA.119: 4 residues within 4Å:- Chain 6: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain 6, 2 Ligand-Water interactions- Metal complexes: 6:V.246, 6:N.248, H2O.247, H2O.247
CA.123: 1 residues within 4Å:- Chain 7: E.55
2 PLIP interactions:1 interactions with chain 7, 1 Ligand-Water interactions- Metal complexes: 7:E.55, H2O.256
CA.125: 7 residues within 4Å:- Chain 0: T.4
- Chain W: T.4
- Ligands: CA.83, CA.97, CA.111, CA.139
- Chain c: T.4
1 PLIP interactions:1 interactions with chain W- Metal complexes: W:T.4
CA.131: 4 residues within 4Å:- Chain a: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain a, 1 Ligand-Water interactions- Metal complexes: a:T.33, a:S.34, a:S.58, a:I.61, H2O.280
CA.132: 4 residues within 4Å:- Chain a: V.41, L.44
- Chain d: K.63, A.65
5 PLIP interactions:2 interactions with chain d, 1 interactions with chain a, 2 Ligand-Water interactions- Metal complexes: d:K.63, d:A.65, a:L.44, H2O.277, H2O.277
CA.133: 4 residues within 4Å:- Chain a: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain a, 2 Ligand-Water interactions- Metal complexes: a:V.246, a:N.248, H2O.277, H2O.277
CA.137: 3 residues within 4Å:- Chain R: E.55
- Ligands: CA.67
- Chain b: E.55
4 PLIP interactions:1 interactions with chain R, 1 interactions with chain b, 2 Ligand-Water interactions- Metal complexes: R:E.55, b:E.55, H2O.136, H2O.286
CA.139: 7 residues within 4Å:- Chain 0: T.4
- Chain 4: T.4
- Chain W: T.4
- Ligands: CA.83, CA.97, CA.111, CA.125
1 PLIP interactions:1 interactions with chain 0- Metal complexes: 0:T.4
CA.145: 4 residues within 4Å:- Chain e: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain e, 1 Ligand-Water interactions- Metal complexes: e:T.33, e:S.34, e:S.58, e:I.61, H2O.310
CA.146: 4 residues within 4Å:- Chain e: V.41, L.44
- Chain h: K.63, A.65
5 PLIP interactions:2 interactions with chain h, 1 interactions with chain e, 2 Ligand-Water interactions- Metal complexes: h:K.63, h:A.65, e:L.44, H2O.307, H2O.307
CA.147: 4 residues within 4Å:- Chain e: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain e, 2 Ligand-Water interactions- Metal complexes: e:V.246, e:N.248, H2O.307, H2O.307
CA.151: 1 residues within 4Å:- Chain f: E.55
2 PLIP interactions:1 interactions with chain f, 1 Ligand-Water interactions- Metal complexes: f:E.55, H2O.316
CA.153: 7 residues within 4Å:- Ligands: CA.167, CA.181, CA.195, CA.209
- Chain k: T.4
- Chain o: T.4
- Chain s: T.4
1 PLIP interactions:1 interactions with chain o- Metal complexes: o:T.4
CA.159: 4 residues within 4Å:- Chain i: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain i, 1 Ligand-Water interactions- Metal complexes: i:T.33, i:S.34, i:S.58, i:I.61, H2O.340
CA.160: 4 residues within 4Å:- Chain i: V.41, L.44
- Chain l: K.63, A.65
5 PLIP interactions:1 interactions with chain i, 2 interactions with chain l, 2 Ligand-Water interactions- Metal complexes: i:L.44, l:K.63, l:A.65, H2O.337, H2O.337
CA.161: 4 residues within 4Å:- Chain i: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain i, 2 Ligand-Water interactions- Metal complexes: i:V.246, i:N.248, H2O.337, H2O.337
CA.165: 1 residues within 4Å:- Chain j: E.55
2 PLIP interactions:1 interactions with chain j, 1 Ligand-Water interactions- Metal complexes: j:E.55, H2O.346
CA.167: 7 residues within 4Å:- Ligands: CA.153, CA.181, CA.195, CA.209
- Chain o: T.4
- Chain s: T.4
- Chain w: T.4
1 PLIP interactions:1 interactions with chain s- Metal complexes: s:T.4
CA.173: 4 residues within 4Å:- Chain m: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain m, 1 Ligand-Water interactions- Metal complexes: m:T.33, m:S.34, m:S.58, m:I.61, H2O.371
CA.174: 4 residues within 4Å:- Chain m: V.41, L.44
- Chain p: K.63, A.65
5 PLIP interactions:2 interactions with chain p, 1 interactions with chain m, 2 Ligand-Water interactions- Metal complexes: p:K.63, p:A.65, m:L.44, H2O.367, H2O.367
CA.175: 4 residues within 4Å:- Chain m: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain m, 2 Ligand-Water interactions- Metal complexes: m:V.246, m:N.248, H2O.367, H2O.367
CA.179: 1 residues within 4Å:- Chain n: E.55
2 PLIP interactions:1 interactions with chain n, 1 Ligand-Water interactions- Metal complexes: n:E.55, H2O.376
CA.181: 7 residues within 4Å:- Ligands: CA.153, CA.167, CA.195, CA.209
- Chain g: T.4
- Chain s: T.4
- Chain w: T.4
1 PLIP interactions:1 interactions with chain w- Metal complexes: w:T.4
CA.187: 4 residues within 4Å:- Chain q: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain q, 1 Ligand-Water interactions- Metal complexes: q:T.33, q:S.34, q:S.58, q:I.61, H2O.401
CA.188: 4 residues within 4Å:- Chain q: V.41, L.44
- Chain t: K.63, A.65
5 PLIP interactions:2 interactions with chain t, 1 interactions with chain q, 2 Ligand-Water interactions- Metal complexes: t:K.63, t:A.65, q:L.44, H2O.397, H2O.397
CA.189: 4 residues within 4Å:- Chain q: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain q, 2 Ligand-Water interactions- Metal complexes: q:V.246, q:N.248, H2O.397, H2O.397
CA.193: 1 residues within 4Å:- Chain r: E.55
2 PLIP interactions:1 interactions with chain r, 1 Ligand-Water interactions- Metal complexes: r:E.55, H2O.406
CA.195: 7 residues within 4Å:- Ligands: CA.153, CA.167, CA.181, CA.209
- Chain g: T.4
- Chain k: T.4
- Chain w: T.4
1 PLIP interactions:1 interactions with chain g- Metal complexes: g:T.4
CA.201: 4 residues within 4Å:- Chain u: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain u, 1 Ligand-Water interactions- Metal complexes: u:T.33, u:S.34, u:S.58, u:I.61, H2O.431
CA.202: 4 residues within 4Å:- Chain u: V.41, L.44
- Chain x: K.63, A.65
5 PLIP interactions:1 interactions with chain u, 2 interactions with chain x, 2 Ligand-Water interactions- Metal complexes: u:L.44, x:K.63, x:A.65, H2O.427, H2O.427
CA.203: 4 residues within 4Å:- Chain u: N.94, W.172, V.246, N.248
4 PLIP interactions:2 interactions with chain u, 2 Ligand-Water interactions- Metal complexes: u:V.246, u:N.248, H2O.427, H2O.428
CA.207: 1 residues within 4Å:- Chain v: E.55
2 PLIP interactions:1 interactions with chain v, 1 Ligand-Water interactions- Metal complexes: v:E.55, H2O.437
CA.209: 7 residues within 4Å:- Ligands: CA.153, CA.167, CA.181, CA.195
- Chain g: T.4
- Chain k: T.4
- Chain o: T.4
1 PLIP interactions:1 interactions with chain k- Metal complexes: k:T.4
- 75 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 5 residues within 4Å:- Chain A: N.248, E.249
- Chain E: T.141, E.142, K.258
Ligand excluded by PLIPCL.9: 2 residues within 4Å:- Chain A: R.245
- Chain E: R.260
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain A: V.299, E.300, T.304
- Chain C: K.92
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain B: D.88, G.151, E.152
Ligand excluded by PLIPCL.14: 2 residues within 4Å:- Chain C: T.59, G.60
Ligand excluded by PLIPCL.22: 5 residues within 4Å:- Chain E: N.248, E.249
- Chain I: T.141, E.142, K.258
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain E: R.245
- Chain I: R.260
Ligand excluded by PLIPCL.24: 4 residues within 4Å:- Chain E: V.299, E.300, T.304
- Chain G: K.92
Ligand excluded by PLIPCL.26: 3 residues within 4Å:- Chain F: D.88, G.151, E.152
Ligand excluded by PLIPCL.28: 2 residues within 4Å:- Chain G: T.59, G.60
Ligand excluded by PLIPCL.36: 5 residues within 4Å:- Chain I: N.248, E.249
- Chain M: T.141, E.142, K.258
Ligand excluded by PLIPCL.37: 2 residues within 4Å:- Chain I: R.245
- Chain M: R.260
Ligand excluded by PLIPCL.38: 4 residues within 4Å:- Chain I: V.299, E.300, T.304
- Chain K: K.92
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain J: D.88, G.151, E.152
Ligand excluded by PLIPCL.42: 2 residues within 4Å:- Chain K: T.59, G.60
Ligand excluded by PLIPCL.50: 5 residues within 4Å:- Chain M: N.248, E.249
- Chain Q: T.141, E.142, K.258
Ligand excluded by PLIPCL.51: 2 residues within 4Å:- Chain M: R.245
- Chain Q: R.260
Ligand excluded by PLIPCL.52: 4 residues within 4Å:- Chain M: V.299, E.300, T.304
- Chain O: K.92
Ligand excluded by PLIPCL.54: 3 residues within 4Å:- Chain N: D.88, G.151, E.152
Ligand excluded by PLIPCL.56: 2 residues within 4Å:- Chain O: T.59, G.60
Ligand excluded by PLIPCL.64: 5 residues within 4Å:- Chain A: T.141, E.142, K.258
- Chain Q: N.248, E.249
Ligand excluded by PLIPCL.65: 2 residues within 4Å:- Chain A: R.260
- Chain Q: R.245
Ligand excluded by PLIPCL.66: 4 residues within 4Å:- Chain Q: V.299, E.300, T.304
- Chain S: K.92
Ligand excluded by PLIPCL.68: 3 residues within 4Å:- Chain R: D.88, G.151, E.152
Ligand excluded by PLIPCL.70: 2 residues within 4Å:- Chain S: T.59, G.60
Ligand excluded by PLIPCL.78: 5 residues within 4Å:- Chain U: N.248, E.249
- Chain Y: T.141, E.142, K.258
Ligand excluded by PLIPCL.79: 2 residues within 4Å:- Chain U: R.245
- Chain Y: R.260
Ligand excluded by PLIPCL.80: 4 residues within 4Å:- Chain U: V.299, E.300, T.304
- Chain W: K.92
Ligand excluded by PLIPCL.82: 3 residues within 4Å:- Chain V: D.88, G.151, E.152
Ligand excluded by PLIPCL.84: 2 residues within 4Å:- Chain W: T.59, G.60
Ligand excluded by PLIPCL.92: 5 residues within 4Å:- Chain 2: T.141, E.142, K.258
- Chain Y: N.248, E.249
Ligand excluded by PLIPCL.93: 2 residues within 4Å:- Chain 2: R.260
- Chain Y: R.245
Ligand excluded by PLIPCL.94: 4 residues within 4Å:- Chain 0: K.92
- Chain Y: V.299, E.300, T.304
Ligand excluded by PLIPCL.96: 3 residues within 4Å:- Chain Z: D.88, G.151, E.152
Ligand excluded by PLIPCL.98: 2 residues within 4Å:- Chain 0: T.59, G.60
Ligand excluded by PLIPCL.106: 5 residues within 4Å:- Chain 2: N.248, E.249
- Chain 6: T.141, E.142, K.258
Ligand excluded by PLIPCL.107: 2 residues within 4Å:- Chain 2: R.245
- Chain 6: R.260
Ligand excluded by PLIPCL.108: 4 residues within 4Å:- Chain 2: V.299, E.300, T.304
- Chain 4: K.92
Ligand excluded by PLIPCL.110: 3 residues within 4Å:- Chain 3: D.88, G.151, E.152
Ligand excluded by PLIPCL.112: 2 residues within 4Å:- Chain 4: T.59, G.60
Ligand excluded by PLIPCL.120: 5 residues within 4Å:- Chain 6: N.248, E.249
- Chain a: T.141, E.142, K.258
Ligand excluded by PLIPCL.121: 2 residues within 4Å:- Chain 6: R.245
- Chain a: R.260
Ligand excluded by PLIPCL.122: 4 residues within 4Å:- Chain 6: V.299, E.300, T.304
- Chain 8: K.92
Ligand excluded by PLIPCL.124: 3 residues within 4Å:- Chain 7: D.88, G.151, E.152
Ligand excluded by PLIPCL.126: 2 residues within 4Å:- Chain 8: T.59, G.60
Ligand excluded by PLIPCL.134: 5 residues within 4Å:- Chain U: T.141, E.142, K.258
- Chain a: N.248, E.249
Ligand excluded by PLIPCL.135: 2 residues within 4Å:- Chain U: R.260
- Chain a: R.245
Ligand excluded by PLIPCL.136: 4 residues within 4Å:- Chain a: V.299, E.300, T.304
- Chain c: K.92
Ligand excluded by PLIPCL.138: 3 residues within 4Å:- Chain b: D.88, G.151, E.152
Ligand excluded by PLIPCL.140: 2 residues within 4Å:- Chain c: T.59, G.60
Ligand excluded by PLIPCL.148: 5 residues within 4Å:- Chain e: N.248, E.249
- Chain i: T.141, E.142, K.258
Ligand excluded by PLIPCL.149: 2 residues within 4Å:- Chain e: R.245
- Chain i: R.260
Ligand excluded by PLIPCL.150: 4 residues within 4Å:- Chain e: V.299, E.300, T.304
- Chain g: K.92
Ligand excluded by PLIPCL.152: 3 residues within 4Å:- Chain f: D.88, G.151, E.152
Ligand excluded by PLIPCL.154: 2 residues within 4Å:- Chain g: T.59, G.60
Ligand excluded by PLIPCL.162: 5 residues within 4Å:- Chain i: N.248, E.249
- Chain m: T.141, E.142, K.258
Ligand excluded by PLIPCL.163: 2 residues within 4Å:- Chain i: R.245
- Chain m: R.260
Ligand excluded by PLIPCL.164: 4 residues within 4Å:- Chain i: V.299, E.300, T.304
- Chain k: K.92
Ligand excluded by PLIPCL.166: 3 residues within 4Å:- Chain j: D.88, G.151, E.152
Ligand excluded by PLIPCL.168: 2 residues within 4Å:- Chain k: T.59, G.60
Ligand excluded by PLIPCL.176: 5 residues within 4Å:- Chain m: N.248, E.249
- Chain q: T.141, E.142, K.258
Ligand excluded by PLIPCL.177: 2 residues within 4Å:- Chain m: R.245
- Chain q: R.260
Ligand excluded by PLIPCL.178: 4 residues within 4Å:- Chain m: V.299, E.300, T.304
- Chain o: K.92
Ligand excluded by PLIPCL.180: 3 residues within 4Å:- Chain n: D.88, G.151, E.152
Ligand excluded by PLIPCL.182: 2 residues within 4Å:- Chain o: T.59, G.60
Ligand excluded by PLIPCL.190: 5 residues within 4Å:- Chain q: N.248, E.249
- Chain u: T.141, E.142, K.258
Ligand excluded by PLIPCL.191: 2 residues within 4Å:- Chain q: R.245
- Chain u: R.260
Ligand excluded by PLIPCL.192: 4 residues within 4Å:- Chain q: V.299, E.300, T.304
- Chain s: K.92
Ligand excluded by PLIPCL.194: 3 residues within 4Å:- Chain r: D.88, G.151, E.152
Ligand excluded by PLIPCL.196: 2 residues within 4Å:- Chain s: T.59, G.60
Ligand excluded by PLIPCL.204: 5 residues within 4Å:- Chain e: T.141, E.142, K.258
- Chain u: N.248, E.249
Ligand excluded by PLIPCL.205: 2 residues within 4Å:- Chain e: R.260
- Chain u: R.245
Ligand excluded by PLIPCL.206: 4 residues within 4Å:- Chain u: V.299, E.300, T.304
- Chain w: K.92
Ligand excluded by PLIPCL.208: 3 residues within 4Å:- Chain v: D.88, G.151, E.152
Ligand excluded by PLIPCL.210: 2 residues within 4Å:- Chain w: T.59, G.60
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zocher, G. et al., A sialic Acid binding site in a human picornavirus. Plos Pathog. (2014)
- Release Date
- 2014-11-05
- Peptides
- Coxsackievirus capsid protein VP1: AEIMQUY26aeimqu
Coxsackievirus capsid protein VP2: BFJNRVZ37bfjnrv
Coxsackievirus capsid protein VP3: CGKOSW048cgkosw
Coxsackievirus capsid protein VP4: DHLPTX159dhlptx - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1Y
12
16
1a
1e
1i
1m
1q
1u
1B
2F
2J
2N
2R
2V
2Z
23
27
2b
2f
2j
2n
2r
2v
2C
3G
3K
3O
3S
3W
30
34
38
3c
3g
3k
3o
3s
3w
3D
4H
4L
4P
4T
4X
41
45
49
4d
4h
4l
4p
4t
4x
4
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- hetero-15-15-15-15-mer
- Ligands
- 15 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 30 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
- 15 x NA: SODIUM ION(Non-functional Binders)
- 75 x CA: CALCIUM ION(Non-covalent)
- 75 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zocher, G. et al., A sialic Acid binding site in a human picornavirus. Plos Pathog. (2014)
- Release Date
- 2014-11-05
- Peptides
- Coxsackievirus capsid protein VP1: AEIMQUY26aeimqu
Coxsackievirus capsid protein VP2: BFJNRVZ37bfjnrv
Coxsackievirus capsid protein VP3: CGKOSW048cgkosw
Coxsackievirus capsid protein VP4: DHLPTX159dhlptx - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1Y
12
16
1a
1e
1i
1m
1q
1u
1B
2F
2J
2N
2R
2V
2Z
23
27
2b
2f
2j
2n
2r
2v
2C
3G
3K
3O
3S
3W
30
34
38
3c
3g
3k
3o
3s
3w
3D
4H
4L
4P
4T
4X
41
45
49
4d
4h
4l
4p
4t
4x
4