- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- hetero-15-15-15-15-mer
- Ligands
- 15 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 30 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
HEZ.2: 7 residues within 4Å:- Chain A: N.154, Y.189, S.191
- Chain E: N.154, G.190
- Ligands: HEZ.19, HEZ.70
Ligand excluded by PLIPHEZ.3: 4 residues within 4Å:- Chain A: Y.230, T.235, E.284
- Chain B: T.140
Ligand excluded by PLIPHEZ.19: 7 residues within 4Å:- Chain E: N.154, Y.189, S.191
- Chain I: N.154, G.190
- Ligands: HEZ.2, HEZ.36
Ligand excluded by PLIPHEZ.20: 4 residues within 4Å:- Chain E: Y.230, T.235, E.284
- Chain F: T.140
Ligand excluded by PLIPHEZ.36: 7 residues within 4Å:- Chain I: N.154, Y.189, S.191
- Chain M: N.154, G.190
- Ligands: HEZ.19, HEZ.53
Ligand excluded by PLIPHEZ.37: 4 residues within 4Å:- Chain I: Y.230, T.235, E.284
- Chain J: T.140
Ligand excluded by PLIPHEZ.53: 7 residues within 4Å:- Chain M: N.154, Y.189, S.191
- Chain Q: N.154, G.190
- Ligands: HEZ.36, HEZ.70
Ligand excluded by PLIPHEZ.54: 4 residues within 4Å:- Chain M: Y.230, T.235, E.284
- Chain N: T.140
Ligand excluded by PLIPHEZ.70: 7 residues within 4Å:- Chain A: N.154, G.190
- Chain Q: N.154, Y.189, S.191
- Ligands: HEZ.2, HEZ.53
Ligand excluded by PLIPHEZ.71: 4 residues within 4Å:- Chain Q: Y.230, T.235, E.284
- Chain R: T.140
Ligand excluded by PLIPHEZ.87: 7 residues within 4Å:- Chain U: N.154, Y.189, S.191
- Chain Y: N.154, G.190
- Ligands: HEZ.104, HEZ.155
Ligand excluded by PLIPHEZ.88: 4 residues within 4Å:- Chain U: Y.230, T.235, E.284
- Chain V: T.140
Ligand excluded by PLIPHEZ.104: 7 residues within 4Å:- Chain 2: N.154, G.190
- Chain Y: N.154, Y.189, S.191
- Ligands: HEZ.87, HEZ.121
Ligand excluded by PLIPHEZ.105: 4 residues within 4Å:- Chain Y: Y.230, T.235, E.284
- Chain Z: T.140
Ligand excluded by PLIPHEZ.121: 7 residues within 4Å:- Chain 2: N.154, Y.189, S.191
- Chain 6: N.154, G.190
- Ligands: HEZ.104, HEZ.138
Ligand excluded by PLIPHEZ.122: 4 residues within 4Å:- Chain 2: Y.230, T.235, E.284
- Chain 3: T.140
Ligand excluded by PLIPHEZ.138: 7 residues within 4Å:- Chain 6: N.154, Y.189, S.191
- Ligands: HEZ.121, HEZ.155
- Chain a: N.154, G.190
Ligand excluded by PLIPHEZ.139: 4 residues within 4Å:- Chain 6: Y.230, T.235, E.284
- Chain 7: T.140
Ligand excluded by PLIPHEZ.155: 7 residues within 4Å:- Chain U: N.154, G.190
- Ligands: HEZ.87, HEZ.138
- Chain a: N.154, Y.189, S.191
Ligand excluded by PLIPHEZ.156: 4 residues within 4Å:- Chain a: Y.230, T.235, E.284
- Chain b: T.140
Ligand excluded by PLIPHEZ.172: 7 residues within 4Å:- Ligands: HEZ.189, HEZ.240
- Chain e: N.154, Y.189, S.191
- Chain i: N.154, G.190
Ligand excluded by PLIPHEZ.173: 4 residues within 4Å:- Chain e: Y.230, T.235, E.284
- Chain f: T.140
Ligand excluded by PLIPHEZ.189: 7 residues within 4Å:- Ligands: HEZ.172, HEZ.206
- Chain i: N.154, Y.189, S.191
- Chain m: N.154, G.190
Ligand excluded by PLIPHEZ.190: 4 residues within 4Å:- Chain i: Y.230, T.235, E.284
- Chain j: T.140
Ligand excluded by PLIPHEZ.206: 7 residues within 4Å:- Ligands: HEZ.189, HEZ.223
- Chain m: N.154, Y.189, S.191
- Chain q: N.154, G.190
Ligand excluded by PLIPHEZ.207: 4 residues within 4Å:- Chain m: Y.230, T.235, E.284
- Chain n: T.140
Ligand excluded by PLIPHEZ.223: 7 residues within 4Å:- Ligands: HEZ.206, HEZ.240
- Chain q: N.154, Y.189, S.191
- Chain u: N.154, G.190
Ligand excluded by PLIPHEZ.224: 4 residues within 4Å:- Chain q: Y.230, T.235, E.284
- Chain r: T.140
Ligand excluded by PLIPHEZ.240: 7 residues within 4Å:- Ligands: HEZ.172, HEZ.223
- Chain e: N.154, G.190
- Chain u: N.154, Y.189, S.191
Ligand excluded by PLIPHEZ.241: 4 residues within 4Å:- Chain u: Y.230, T.235, E.284
- Chain v: T.140
Ligand excluded by PLIP- 75 x CA: CALCIUM ION(Non-covalent)
CA.4: 4 residues within 4Å:- Chain A: T.33, S.34, S.58, I.61
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.33, A:S.34, A:S.58, A:I.61, H2O.10, H2O.287
CA.5: 4 residues within 4Å:- Chain A: V.41, L.44
- Chain D: K.63, A.65
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: D:K.63, D:A.65, A:L.44, H2O.6, H2O.6
CA.6: 4 residues within 4Å:- Chain A: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:T.26, A:A.27, A:S.29, A:N.68
CA.11: 1 residues within 4Å:- Chain B: E.55
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.55, H2O.16, H2O.20
CA.14: 9 residues within 4Å:- Chain C: T.4
- Chain G: T.4
- Chain K: T.4
- Chain O: T.4
- Chain S: T.4
- Ligands: CA.31, CA.48, CA.65, CA.82
No protein-ligand interaction detected (PLIP)CA.21: 4 residues within 4Å:- Chain E: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:T.33, E:S.34, E:S.58, E:I.61, H2O.40
CA.22: 4 residues within 4Å:- Chain E: V.41, L.44
- Chain H: K.63, A.65
5 PLIP interactions:2 interactions with chain H, 1 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: H:K.63, H:A.65, E:L.44, H2O.37, H2O.37
CA.23: 4 residues within 4Å:- Chain E: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:T.26, E:A.27, E:S.29, E:N.68
CA.28: 1 residues within 4Å:- Chain F: E.55
3 PLIP interactions:1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:E.55, H2O.46, H2O.50
CA.31: 9 residues within 4Å:- Chain C: T.4
- Chain G: T.4
- Chain K: T.4
- Chain O: T.4
- Chain S: T.4
- Ligands: CA.14, CA.48, CA.65, CA.82
No protein-ligand interaction detected (PLIP)CA.38: 4 residues within 4Å:- Chain I: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:T.33, I:S.34, I:S.58, I:I.61, H2O.71
CA.39: 4 residues within 4Å:- Chain I: V.41, L.44
- Chain L: K.63, A.65
5 PLIP interactions:2 interactions with chain L, 1 interactions with chain I, 2 Ligand-Water interactions- Metal complexes: L:K.63, L:A.65, I:L.44, H2O.67, H2O.67
CA.40: 4 residues within 4Å:- Chain I: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:T.26, I:A.27, I:S.29, I:N.68
CA.45: 1 residues within 4Å:- Chain J: E.55
3 PLIP interactions:1 interactions with chain J, 2 Ligand-Water interactions- Metal complexes: J:E.55, H2O.77, H2O.81
CA.48: 9 residues within 4Å:- Chain C: T.4
- Chain G: T.4
- Chain K: T.4
- Chain O: T.4
- Chain S: T.4
- Ligands: CA.14, CA.31, CA.65, CA.82
No protein-ligand interaction detected (PLIP)CA.55: 4 residues within 4Å:- Chain M: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain M, 1 Ligand-Water interactions- Metal complexes: M:T.33, M:S.34, M:S.58, M:I.61, H2O.101
CA.56: 4 residues within 4Å:- Chain M: V.41, L.44
- Chain P: K.63, A.65
5 PLIP interactions:2 interactions with chain P, 1 interactions with chain M, 2 Ligand-Water interactions- Metal complexes: P:K.63, P:A.65, M:L.44, H2O.98, H2O.98
CA.57: 4 residues within 4Å:- Chain M: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain M- Metal complexes: M:T.26, M:A.27, M:S.29, M:N.68
CA.62: 1 residues within 4Å:- Chain N: E.55
3 PLIP interactions:1 interactions with chain N, 2 Ligand-Water interactions- Metal complexes: N:E.55, H2O.107, H2O.111
CA.65: 9 residues within 4Å:- Chain C: T.4
- Chain G: T.4
- Chain K: T.4
- Chain O: T.4
- Chain S: T.4
- Ligands: CA.14, CA.31, CA.48, CA.82
No protein-ligand interaction detected (PLIP)CA.72: 4 residues within 4Å:- Chain Q: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: Q:T.33, Q:S.34, Q:S.58, Q:I.61, H2O.132
CA.73: 4 residues within 4Å:- Chain Q: V.41, L.44
- Chain T: K.63, A.65
5 PLIP interactions:2 interactions with chain T, 1 interactions with chain Q, 2 Ligand-Water interactions- Metal complexes: T:K.63, T:A.65, Q:L.44, H2O.128, H2O.128
CA.74: 4 residues within 4Å:- Chain Q: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain Q- Metal complexes: Q:T.26, Q:A.27, Q:S.29, Q:N.68
CA.79: 3 residues within 4Å:- Chain R: E.55
- Ligands: CA.164
- Chain b: E.55
5 PLIP interactions:1 interactions with chain b, 1 interactions with chain R, 3 Ligand-Water interactions- Metal complexes: b:E.55, R:E.55, H2O.138, H2O.142, H2O.290
CA.82: 9 residues within 4Å:- Chain C: T.4
- Chain G: T.4
- Chain K: T.4
- Chain O: T.4
- Chain S: T.4
- Ligands: CA.14, CA.31, CA.48, CA.65
No protein-ligand interaction detected (PLIP)CA.89: 4 residues within 4Å:- Chain U: T.33, S.34, S.58, I.61
6 PLIP interactions:4 interactions with chain U, 2 Ligand-Water interactions- Metal complexes: U:T.33, U:S.34, U:S.58, U:I.61, H2O.134, H2O.162
CA.90: 4 residues within 4Å:- Chain U: V.41, L.44
- Chain X: K.63, A.65
5 PLIP interactions:2 interactions with chain X, 1 interactions with chain U, 2 Ligand-Water interactions- Metal complexes: X:K.63, X:A.65, U:L.44, H2O.159, H2O.159
CA.91: 4 residues within 4Å:- Chain U: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain U- Metal complexes: U:T.26, U:A.27, U:S.29, U:N.68
CA.96: 1 residues within 4Å:- Chain V: E.55
3 PLIP interactions:1 interactions with chain V, 2 Ligand-Water interactions- Metal complexes: V:E.55, H2O.168, H2O.172
CA.99: 9 residues within 4Å:- Chain 0: T.4
- Chain 4: T.4
- Chain 8: T.4
- Chain W: T.4
- Ligands: CA.116, CA.133, CA.150, CA.167
- Chain c: T.4
No protein-ligand interaction detected (PLIP)CA.106: 4 residues within 4Å:- Chain Y: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain Y, 1 Ligand-Water interactions- Metal complexes: Y:T.33, Y:S.34, Y:S.58, Y:I.61, H2O.193
CA.107: 4 residues within 4Å:- Chain 1: K.63, A.65
- Chain Y: V.41, L.44
5 PLIP interactions:2 interactions with chain 1, 1 interactions with chain Y, 2 Ligand-Water interactions- Metal complexes: 1:K.63, 1:A.65, Y:L.44, H2O.189, H2O.189
CA.108: 4 residues within 4Å:- Chain Y: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain Y- Metal complexes: Y:T.26, Y:A.27, Y:S.29, Y:N.68
CA.113: 1 residues within 4Å:- Chain Z: E.55
3 PLIP interactions:1 interactions with chain Z, 2 Ligand-Water interactions- Metal complexes: Z:E.55, H2O.199, H2O.203
CA.116: 9 residues within 4Å:- Chain 0: T.4
- Chain 4: T.4
- Chain 8: T.4
- Chain W: T.4
- Ligands: CA.99, CA.133, CA.150, CA.167
- Chain c: T.4
No protein-ligand interaction detected (PLIP)CA.123: 4 residues within 4Å:- Chain 2: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain 2, 1 Ligand-Water interactions- Metal complexes: 2:T.33, 2:S.34, 2:S.58, 2:I.61, H2O.223
CA.124: 4 residues within 4Å:- Chain 2: V.41, L.44
- Chain 5: K.63, A.65
5 PLIP interactions:2 interactions with chain 5, 1 interactions with chain 2, 2 Ligand-Water interactions- Metal complexes: 5:K.63, 5:A.65, 2:L.44, H2O.220, H2O.220
CA.125: 4 residues within 4Å:- Chain 2: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain 2- Metal complexes: 2:T.26, 2:A.27, 2:S.29, 2:N.68
CA.130: 1 residues within 4Å:- Chain 3: E.55
3 PLIP interactions:1 interactions with chain 3, 2 Ligand-Water interactions- Metal complexes: 3:E.55, H2O.229, H2O.233
CA.133: 9 residues within 4Å:- Chain 0: T.4
- Chain 4: T.4
- Chain 8: T.4
- Chain W: T.4
- Ligands: CA.99, CA.116, CA.150, CA.167
- Chain c: T.4
No protein-ligand interaction detected (PLIP)CA.140: 4 residues within 4Å:- Chain 6: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain 6, 1 Ligand-Water interactions- Metal complexes: 6:T.33, 6:S.34, 6:S.58, 6:I.61, H2O.254
CA.141: 4 residues within 4Å:- Chain 6: V.41, L.44
- Chain 9: K.63, A.65
5 PLIP interactions:1 interactions with chain 6, 2 interactions with chain 9, 2 Ligand-Water interactions- Metal complexes: 6:L.44, 9:K.63, 9:A.65, H2O.250, H2O.250
CA.142: 4 residues within 4Å:- Chain 6: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain 6- Metal complexes: 6:T.26, 6:A.27, 6:S.29, 6:N.68
CA.147: 1 residues within 4Å:- Chain 7: E.55
3 PLIP interactions:1 interactions with chain 7, 2 Ligand-Water interactions- Metal complexes: 7:E.55, H2O.260, H2O.264
CA.150: 9 residues within 4Å:- Chain 0: T.4
- Chain 4: T.4
- Chain 8: T.4
- Chain W: T.4
- Ligands: CA.99, CA.116, CA.133, CA.167
- Chain c: T.4
No protein-ligand interaction detected (PLIP)CA.157: 4 residues within 4Å:- Chain a: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain a, 1 Ligand-Water interactions- Metal complexes: a:T.33, a:S.34, a:S.58, a:I.61, H2O.284
CA.158: 4 residues within 4Å:- Chain a: V.41, L.44
- Chain d: K.63, A.65
5 PLIP interactions:2 interactions with chain d, 1 interactions with chain a, 2 Ligand-Water interactions- Metal complexes: d:K.63, d:A.65, a:L.44, H2O.281, H2O.281
CA.159: 4 residues within 4Å:- Chain a: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain a- Metal complexes: a:T.26, a:A.27, a:S.29, a:N.68
CA.164: 3 residues within 4Å:- Chain R: E.55
- Ligands: CA.79
- Chain b: E.55
5 PLIP interactions:1 interactions with chain R, 1 interactions with chain b, 3 Ligand-Water interactions- Metal complexes: R:E.55, b:E.55, H2O.138, H2O.290, H2O.294
CA.167: 9 residues within 4Å:- Chain 0: T.4
- Chain 4: T.4
- Chain 8: T.4
- Chain W: T.4
- Ligands: CA.99, CA.116, CA.133, CA.150
- Chain c: T.4
No protein-ligand interaction detected (PLIP)CA.174: 4 residues within 4Å:- Chain e: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain e, 1 Ligand-Water interactions- Metal complexes: e:T.33, e:S.34, e:S.58, e:I.61, H2O.315
CA.175: 4 residues within 4Å:- Chain e: V.41, L.44
- Chain h: K.63, A.65
5 PLIP interactions:1 interactions with chain e, 2 interactions with chain h, 2 Ligand-Water interactions- Metal complexes: e:L.44, h:K.63, h:A.65, H2O.311, H2O.311
CA.176: 4 residues within 4Å:- Chain e: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain e- Metal complexes: e:T.26, e:A.27, e:S.29, e:N.68
CA.181: 1 residues within 4Å:- Chain f: E.55
3 PLIP interactions:1 interactions with chain f, 2 Ligand-Water interactions- Metal complexes: f:E.55, H2O.321, H2O.325
CA.184: 9 residues within 4Å:- Ligands: CA.201, CA.218, CA.235, CA.252
- Chain g: T.4
- Chain k: T.4
- Chain o: T.4
- Chain s: T.4
- Chain w: T.4
No protein-ligand interaction detected (PLIP)CA.191: 4 residues within 4Å:- Chain i: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain i, 1 Ligand-Water interactions- Metal complexes: i:T.33, i:S.34, i:S.58, i:I.61, H2O.345
CA.192: 4 residues within 4Å:- Chain i: V.41, L.44
- Chain l: K.63, A.65
5 PLIP interactions:2 interactions with chain l, 1 interactions with chain i, 2 Ligand-Water interactions- Metal complexes: l:K.63, l:A.65, i:L.44, H2O.342, H2O.342
CA.193: 4 residues within 4Å:- Chain i: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain i- Metal complexes: i:T.26, i:A.27, i:S.29, i:N.68
CA.198: 1 residues within 4Å:- Chain j: E.55
3 PLIP interactions:1 interactions with chain j, 2 Ligand-Water interactions- Metal complexes: j:E.55, H2O.351, H2O.355
CA.201: 9 residues within 4Å:- Ligands: CA.184, CA.218, CA.235, CA.252
- Chain g: T.4
- Chain k: T.4
- Chain o: T.4
- Chain s: T.4
- Chain w: T.4
No protein-ligand interaction detected (PLIP)CA.208: 4 residues within 4Å:- Chain m: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain m, 1 Ligand-Water interactions- Metal complexes: m:T.33, m:S.34, m:S.58, m:I.61, H2O.376
CA.209: 4 residues within 4Å:- Chain m: V.41, L.44
- Chain p: K.63, A.65
5 PLIP interactions:2 interactions with chain p, 1 interactions with chain m, 2 Ligand-Water interactions- Metal complexes: p:K.63, p:A.65, m:L.44, H2O.372, H2O.372
CA.210: 4 residues within 4Å:- Chain m: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain m- Metal complexes: m:T.26, m:A.27, m:S.29, m:N.68
CA.215: 1 residues within 4Å:- Chain n: E.55
3 PLIP interactions:1 interactions with chain n, 2 Ligand-Water interactions- Metal complexes: n:E.55, H2O.382, H2O.386
CA.218: 9 residues within 4Å:- Ligands: CA.184, CA.201, CA.235, CA.252
- Chain g: T.4
- Chain k: T.4
- Chain o: T.4
- Chain s: T.4
- Chain w: T.4
No protein-ligand interaction detected (PLIP)CA.225: 4 residues within 4Å:- Chain q: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain q, 1 Ligand-Water interactions- Metal complexes: q:T.33, q:S.34, q:S.58, q:I.61, H2O.406
CA.226: 4 residues within 4Å:- Chain q: V.41, L.44
- Chain t: K.63, A.65
5 PLIP interactions:1 interactions with chain q, 2 interactions with chain t, 2 Ligand-Water interactions- Metal complexes: q:L.44, t:K.63, t:A.65, H2O.403, H2O.403
CA.227: 4 residues within 4Å:- Chain q: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain q- Metal complexes: q:T.26, q:A.27, q:S.29, q:N.68
CA.232: 1 residues within 4Å:- Chain r: E.55
3 PLIP interactions:1 interactions with chain r, 2 Ligand-Water interactions- Metal complexes: r:E.55, H2O.412, H2O.416
CA.235: 9 residues within 4Å:- Ligands: CA.184, CA.201, CA.218, CA.252
- Chain g: T.4
- Chain k: T.4
- Chain o: T.4
- Chain s: T.4
- Chain w: T.4
No protein-ligand interaction detected (PLIP)CA.242: 4 residues within 4Å:- Chain u: T.33, S.34, S.58, I.61
5 PLIP interactions:4 interactions with chain u, 1 Ligand-Water interactions- Metal complexes: u:T.33, u:S.34, u:S.58, u:I.61, H2O.437
CA.243: 4 residues within 4Å:- Chain u: V.41, L.44
- Chain x: K.63, A.65
5 PLIP interactions:2 interactions with chain x, 1 interactions with chain u, 2 Ligand-Water interactions- Metal complexes: x:K.63, x:A.65, u:L.44, H2O.433, H2O.433
CA.244: 4 residues within 4Å:- Chain u: T.26, A.27, S.29, N.68
4 PLIP interactions:4 interactions with chain u- Metal complexes: u:T.26, u:A.27, u:S.29, u:N.68
CA.249: 1 residues within 4Å:- Chain v: E.55
3 PLIP interactions:1 interactions with chain v, 2 Ligand-Water interactions- Metal complexes: v:E.55, H2O.443, H2O.447
CA.252: 9 residues within 4Å:- Ligands: CA.184, CA.201, CA.218, CA.235
- Chain g: T.4
- Chain k: T.4
- Chain o: T.4
- Chain s: T.4
- Chain w: T.4
No protein-ligand interaction detected (PLIP)- 105 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 5 residues within 4Å:- Chain A: N.248, E.249
- Chain E: T.141, E.142, K.258
Ligand excluded by PLIPCL.8: 2 residues within 4Å:- Chain A: R.245
- Chain E: R.260
Ligand excluded by PLIPCL.9: 4 residues within 4Å:- Chain A: V.299, E.300, T.304
- Chain C: K.92
Ligand excluded by PLIPCL.10: 5 residues within 4Å:- Chain A: K.220, D.221
- Chain B: A.269, T.270, Q.271
Ligand excluded by PLIPCL.13: 3 residues within 4Å:- Chain B: K.87, G.151, E.152
Ligand excluded by PLIPCL.15: 2 residues within 4Å:- Chain C: T.59, G.60
Ligand excluded by PLIPCL.16: 3 residues within 4Å:- Chain C: F.19, Q.20
- Chain O: G.1
Ligand excluded by PLIPCL.24: 5 residues within 4Å:- Chain E: N.248, E.249
- Chain I: T.141, E.142, K.258
Ligand excluded by PLIPCL.25: 2 residues within 4Å:- Chain E: R.245
- Chain I: R.260
Ligand excluded by PLIPCL.26: 4 residues within 4Å:- Chain E: V.299, E.300, T.304
- Chain G: K.92
Ligand excluded by PLIPCL.27: 5 residues within 4Å:- Chain E: K.220, D.221
- Chain F: A.269, T.270, Q.271
Ligand excluded by PLIPCL.30: 3 residues within 4Å:- Chain F: K.87, G.151, E.152
Ligand excluded by PLIPCL.32: 2 residues within 4Å:- Chain G: T.59, G.60
Ligand excluded by PLIPCL.33: 3 residues within 4Å:- Chain G: F.19, Q.20
- Chain S: G.1
Ligand excluded by PLIPCL.41: 5 residues within 4Å:- Chain I: N.248, E.249
- Chain M: T.141, E.142, K.258
Ligand excluded by PLIPCL.42: 2 residues within 4Å:- Chain I: R.245
- Chain M: R.260
Ligand excluded by PLIPCL.43: 4 residues within 4Å:- Chain I: V.299, E.300, T.304
- Chain K: K.92
Ligand excluded by PLIPCL.44: 5 residues within 4Å:- Chain I: K.220, D.221
- Chain J: A.269, T.270, Q.271
Ligand excluded by PLIPCL.47: 3 residues within 4Å:- Chain J: K.87, G.151, E.152
Ligand excluded by PLIPCL.49: 2 residues within 4Å:- Chain K: T.59, G.60
Ligand excluded by PLIPCL.50: 3 residues within 4Å:- Chain C: G.1
- Chain K: F.19, Q.20
Ligand excluded by PLIPCL.58: 5 residues within 4Å:- Chain M: N.248, E.249
- Chain Q: T.141, E.142, K.258
Ligand excluded by PLIPCL.59: 2 residues within 4Å:- Chain M: R.245
- Chain Q: R.260
Ligand excluded by PLIPCL.60: 4 residues within 4Å:- Chain M: V.299, E.300, T.304
- Chain O: K.92
Ligand excluded by PLIPCL.61: 5 residues within 4Å:- Chain M: K.220, D.221
- Chain N: A.269, T.270, Q.271
Ligand excluded by PLIPCL.64: 3 residues within 4Å:- Chain N: K.87, G.151, E.152
Ligand excluded by PLIPCL.66: 2 residues within 4Å:- Chain O: T.59, G.60
Ligand excluded by PLIPCL.67: 3 residues within 4Å:- Chain G: G.1
- Chain O: F.19, Q.20
Ligand excluded by PLIPCL.75: 5 residues within 4Å:- Chain A: T.141, E.142, K.258
- Chain Q: N.248, E.249
Ligand excluded by PLIPCL.76: 2 residues within 4Å:- Chain A: R.260
- Chain Q: R.245
Ligand excluded by PLIPCL.77: 4 residues within 4Å:- Chain Q: V.299, E.300, T.304
- Chain S: K.92
Ligand excluded by PLIPCL.78: 5 residues within 4Å:- Chain Q: K.220, D.221
- Chain R: A.269, T.270, Q.271
Ligand excluded by PLIPCL.81: 3 residues within 4Å:- Chain R: K.87, G.151, E.152
Ligand excluded by PLIPCL.83: 2 residues within 4Å:- Chain S: T.59, G.60
Ligand excluded by PLIPCL.84: 3 residues within 4Å:- Chain K: G.1
- Chain S: F.19, Q.20
Ligand excluded by PLIPCL.92: 5 residues within 4Å:- Chain U: N.248, E.249
- Chain Y: T.141, E.142, K.258
Ligand excluded by PLIPCL.93: 2 residues within 4Å:- Chain U: R.245
- Chain Y: R.260
Ligand excluded by PLIPCL.94: 4 residues within 4Å:- Chain U: V.299, E.300, T.304
- Chain W: K.92
Ligand excluded by PLIPCL.95: 5 residues within 4Å:- Chain U: K.220, D.221
- Chain V: A.269, T.270, Q.271
Ligand excluded by PLIPCL.98: 3 residues within 4Å:- Chain V: K.87, G.151, E.152
Ligand excluded by PLIPCL.100: 2 residues within 4Å:- Chain W: T.59, G.60
Ligand excluded by PLIPCL.101: 3 residues within 4Å:- Chain 8: G.1
- Chain W: F.19, Q.20
Ligand excluded by PLIPCL.109: 5 residues within 4Å:- Chain 2: T.141, E.142, K.258
- Chain Y: N.248, E.249
Ligand excluded by PLIPCL.110: 2 residues within 4Å:- Chain 2: R.260
- Chain Y: R.245
Ligand excluded by PLIPCL.111: 4 residues within 4Å:- Chain 0: K.92
- Chain Y: V.299, E.300, T.304
Ligand excluded by PLIPCL.112: 5 residues within 4Å:- Chain Y: K.220, D.221
- Chain Z: A.269, T.270, Q.271
Ligand excluded by PLIPCL.115: 3 residues within 4Å:- Chain Z: K.87, G.151, E.152
Ligand excluded by PLIPCL.117: 2 residues within 4Å:- Chain 0: T.59, G.60
Ligand excluded by PLIPCL.118: 3 residues within 4Å:- Chain 0: F.19, Q.20
- Chain c: G.1
Ligand excluded by PLIPCL.126: 5 residues within 4Å:- Chain 2: N.248, E.249
- Chain 6: T.141, E.142, K.258
Ligand excluded by PLIPCL.127: 2 residues within 4Å:- Chain 2: R.245
- Chain 6: R.260
Ligand excluded by PLIPCL.128: 4 residues within 4Å:- Chain 2: V.299, E.300, T.304
- Chain 4: K.92
Ligand excluded by PLIPCL.129: 5 residues within 4Å:- Chain 2: K.220, D.221
- Chain 3: A.269, T.270, Q.271
Ligand excluded by PLIPCL.132: 3 residues within 4Å:- Chain 3: K.87, G.151, E.152
Ligand excluded by PLIPCL.134: 2 residues within 4Å:- Chain 4: T.59, G.60
Ligand excluded by PLIPCL.135: 3 residues within 4Å:- Chain 4: F.19, Q.20
- Chain W: G.1
Ligand excluded by PLIPCL.143: 5 residues within 4Å:- Chain 6: N.248, E.249
- Chain a: T.141, E.142, K.258
Ligand excluded by PLIPCL.144: 2 residues within 4Å:- Chain 6: R.245
- Chain a: R.260
Ligand excluded by PLIPCL.145: 4 residues within 4Å:- Chain 6: V.299, E.300, T.304
- Chain 8: K.92
Ligand excluded by PLIPCL.146: 5 residues within 4Å:- Chain 6: K.220, D.221
- Chain 7: A.269, T.270, Q.271
Ligand excluded by PLIPCL.149: 3 residues within 4Å:- Chain 7: K.87, G.151, E.152
Ligand excluded by PLIPCL.151: 2 residues within 4Å:- Chain 8: T.59, G.60
Ligand excluded by PLIPCL.152: 3 residues within 4Å:- Chain 0: G.1
- Chain 8: F.19, Q.20
Ligand excluded by PLIPCL.160: 5 residues within 4Å:- Chain U: T.141, E.142, K.258
- Chain a: N.248, E.249
Ligand excluded by PLIPCL.161: 2 residues within 4Å:- Chain U: R.260
- Chain a: R.245
Ligand excluded by PLIPCL.162: 4 residues within 4Å:- Chain a: V.299, E.300, T.304
- Chain c: K.92
Ligand excluded by PLIPCL.163: 5 residues within 4Å:- Chain a: K.220, D.221
- Chain b: A.269, T.270, Q.271
Ligand excluded by PLIPCL.166: 3 residues within 4Å:- Chain b: K.87, G.151, E.152
Ligand excluded by PLIPCL.168: 2 residues within 4Å:- Chain c: T.59, G.60
Ligand excluded by PLIPCL.169: 3 residues within 4Å:- Chain 4: G.1
- Chain c: F.19, Q.20
Ligand excluded by PLIPCL.177: 5 residues within 4Å:- Chain e: N.248, E.249
- Chain i: T.141, E.142, K.258
Ligand excluded by PLIPCL.178: 2 residues within 4Å:- Chain e: R.245
- Chain i: R.260
Ligand excluded by PLIPCL.179: 4 residues within 4Å:- Chain e: V.299, E.300, T.304
- Chain g: K.92
Ligand excluded by PLIPCL.180: 5 residues within 4Å:- Chain e: K.220, D.221
- Chain f: A.269, T.270, Q.271
Ligand excluded by PLIPCL.183: 3 residues within 4Å:- Chain f: K.87, G.151, E.152
Ligand excluded by PLIPCL.185: 2 residues within 4Å:- Chain g: T.59, G.60
Ligand excluded by PLIPCL.186: 3 residues within 4Å:- Chain g: F.19, Q.20
- Chain s: G.1
Ligand excluded by PLIPCL.194: 5 residues within 4Å:- Chain i: N.248, E.249
- Chain m: T.141, E.142, K.258
Ligand excluded by PLIPCL.195: 2 residues within 4Å:- Chain i: R.245
- Chain m: R.260
Ligand excluded by PLIPCL.196: 4 residues within 4Å:- Chain i: V.299, E.300, T.304
- Chain k: K.92
Ligand excluded by PLIPCL.197: 5 residues within 4Å:- Chain i: K.220, D.221
- Chain j: A.269, T.270, Q.271
Ligand excluded by PLIPCL.200: 3 residues within 4Å:- Chain j: K.87, G.151, E.152
Ligand excluded by PLIPCL.202: 2 residues within 4Å:- Chain k: T.59, G.60
Ligand excluded by PLIPCL.203: 3 residues within 4Å:- Chain k: F.19, Q.20
- Chain w: G.1
Ligand excluded by PLIPCL.211: 5 residues within 4Å:- Chain m: N.248, E.249
- Chain q: T.141, E.142, K.258
Ligand excluded by PLIPCL.212: 2 residues within 4Å:- Chain m: R.245
- Chain q: R.260
Ligand excluded by PLIPCL.213: 4 residues within 4Å:- Chain m: V.299, E.300, T.304
- Chain o: K.92
Ligand excluded by PLIPCL.214: 5 residues within 4Å:- Chain m: K.220, D.221
- Chain n: A.269, T.270, Q.271
Ligand excluded by PLIPCL.217: 3 residues within 4Å:- Chain n: K.87, G.151, E.152
Ligand excluded by PLIPCL.219: 2 residues within 4Å:- Chain o: T.59, G.60
Ligand excluded by PLIPCL.220: 3 residues within 4Å:- Chain g: G.1
- Chain o: F.19, Q.20
Ligand excluded by PLIPCL.228: 5 residues within 4Å:- Chain q: N.248, E.249
- Chain u: T.141, E.142, K.258
Ligand excluded by PLIPCL.229: 2 residues within 4Å:- Chain q: R.245
- Chain u: R.260
Ligand excluded by PLIPCL.230: 4 residues within 4Å:- Chain q: V.299, E.300, T.304
- Chain s: K.92
Ligand excluded by PLIPCL.231: 5 residues within 4Å:- Chain q: K.220, D.221
- Chain r: A.269, T.270, Q.271
Ligand excluded by PLIPCL.234: 3 residues within 4Å:- Chain r: K.87, G.151, E.152
Ligand excluded by PLIPCL.236: 2 residues within 4Å:- Chain s: T.59, G.60
Ligand excluded by PLIPCL.237: 3 residues within 4Å:- Chain k: G.1
- Chain s: F.19, Q.20
Ligand excluded by PLIPCL.245: 5 residues within 4Å:- Chain e: T.141, E.142, K.258
- Chain u: N.248, E.249
Ligand excluded by PLIPCL.246: 2 residues within 4Å:- Chain e: R.260
- Chain u: R.245
Ligand excluded by PLIPCL.247: 4 residues within 4Å:- Chain u: V.299, E.300, T.304
- Chain w: K.92
Ligand excluded by PLIPCL.248: 5 residues within 4Å:- Chain u: K.220, D.221
- Chain v: A.269, T.270, Q.271
Ligand excluded by PLIPCL.251: 3 residues within 4Å:- Chain v: K.87, G.151, E.152
Ligand excluded by PLIPCL.253: 2 residues within 4Å:- Chain w: T.59, G.60
Ligand excluded by PLIPCL.254: 3 residues within 4Å:- Chain o: G.1
- Chain w: F.19, Q.20
Ligand excluded by PLIP- 15 x MG: MAGNESIUM ION(Non-covalent)
MG.12: 1 residues within 4Å:- Chain B: E.152
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:E.152, H2O.15, H2O.17, H2O.18, H2O.20
MG.29: 1 residues within 4Å:- Chain F: E.152
5 PLIP interactions:1 interactions with chain F, 4 Ligand-Water interactions- Metal complexes: F:E.152, H2O.45, H2O.48, H2O.48, H2O.50
MG.46: 1 residues within 4Å:- Chain J: E.152
5 PLIP interactions:1 interactions with chain J, 4 Ligand-Water interactions- Metal complexes: J:E.152, H2O.76, H2O.78, H2O.79, H2O.81
MG.63: 1 residues within 4Å:- Chain N: E.152
5 PLIP interactions:1 interactions with chain N, 4 Ligand-Water interactions- Metal complexes: N:E.152, H2O.106, H2O.109, H2O.109, H2O.111
MG.80: 2 residues within 4Å:- Chain R: E.152
- Chain W: K.145
6 PLIP interactions:1 interactions with chain R, 5 Ligand-Water interactions- Metal complexes: R:E.152, H2O.137, H2O.139, H2O.140, H2O.142, H2O.175
MG.97: 1 residues within 4Å:- Chain V: E.152
5 PLIP interactions:1 interactions with chain V, 4 Ligand-Water interactions- Metal complexes: V:E.152, H2O.167, H2O.170, H2O.170, H2O.172
MG.114: 1 residues within 4Å:- Chain Z: E.152
5 PLIP interactions:1 interactions with chain Z, 4 Ligand-Water interactions- Metal complexes: Z:E.152, H2O.198, H2O.200, H2O.201, H2O.203
MG.131: 1 residues within 4Å:- Chain 3: E.152
5 PLIP interactions:1 interactions with chain 3, 4 Ligand-Water interactions- Metal complexes: 3:E.152, H2O.228, H2O.231, H2O.231, H2O.233
MG.148: 1 residues within 4Å:- Chain 7: E.152
5 PLIP interactions:1 interactions with chain 7, 4 Ligand-Water interactions- Metal complexes: 7:E.152, H2O.259, H2O.261, H2O.262, H2O.264
MG.165: 2 residues within 4Å:- Chain C: K.145
- Chain b: E.152
6 PLIP interactions:1 interactions with chain b, 5 Ligand-Water interactions- Metal complexes: b:E.152, H2O.22, H2O.289, H2O.292, H2O.292, H2O.294
MG.182: 1 residues within 4Å:- Chain f: E.152
5 PLIP interactions:1 interactions with chain f, 4 Ligand-Water interactions- Metal complexes: f:E.152, H2O.320, H2O.322, H2O.323, H2O.325
MG.199: 1 residues within 4Å:- Chain j: E.152
5 PLIP interactions:1 interactions with chain j, 4 Ligand-Water interactions- Metal complexes: j:E.152, H2O.350, H2O.353, H2O.353, H2O.355
MG.216: 1 residues within 4Å:- Chain n: E.152
5 PLIP interactions:1 interactions with chain n, 4 Ligand-Water interactions- Metal complexes: n:E.152, H2O.381, H2O.383, H2O.384, H2O.386
MG.233: 1 residues within 4Å:- Chain r: E.152
5 PLIP interactions:1 interactions with chain r, 4 Ligand-Water interactions- Metal complexes: r:E.152, H2O.411, H2O.414, H2O.414, H2O.416
MG.250: 1 residues within 4Å:- Chain v: E.152
5 PLIP interactions:1 interactions with chain v, 4 Ligand-Water interactions- Metal complexes: v:E.152, H2O.442, H2O.444, H2O.445, H2O.447
- 15 x MYR: MYRISTIC ACID(Covalent)
MYR.17: 4 residues within 4Å:- Chain D: G.2, A.3
- Chain H: V.5, T.28
No protein-ligand interaction detected (PLIP)MYR.34: 4 residues within 4Å:- Chain H: G.2, A.3
- Chain L: V.5, T.28
1 PLIP interactions:1 interactions with chain L- Hydrogen bonds: L:T.28
MYR.51: 4 residues within 4Å:- Chain L: G.2, A.3
- Chain P: V.5, T.28
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:T.28
MYR.68: 4 residues within 4Å:- Chain P: G.2, A.3
- Chain T: V.5, T.28
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:T.28
MYR.85: 4 residues within 4Å:- Chain D: V.5, T.28
- Chain T: G.2, A.3
No protein-ligand interaction detected (PLIP)MYR.102: 4 residues within 4Å:- Chain 1: V.5, T.28
- Chain X: G.2, A.3
1 PLIP interactions:1 interactions with chain 1- Hydrogen bonds: 1:T.28
MYR.119: 4 residues within 4Å:- Chain 1: G.2, A.3
- Chain 5: V.5, T.28
No protein-ligand interaction detected (PLIP)MYR.136: 4 residues within 4Å:- Chain 5: G.2, A.3
- Chain 9: V.5, T.28
No protein-ligand interaction detected (PLIP)MYR.153: 4 residues within 4Å:- Chain 9: G.2, A.3
- Chain d: V.5, T.28
1 PLIP interactions:1 interactions with chain d- Hydrogen bonds: d:T.28
MYR.170: 4 residues within 4Å:- Chain X: V.5, T.28
- Chain d: G.2, A.3
1 PLIP interactions:1 interactions with chain X- Hydrogen bonds: X:T.28
MYR.187: 4 residues within 4Å:- Chain h: G.2, A.3
- Chain l: V.5, T.28
No protein-ligand interaction detected (PLIP)MYR.204: 4 residues within 4Å:- Chain l: G.2, A.3
- Chain p: V.5, T.28
No protein-ligand interaction detected (PLIP)MYR.221: 4 residues within 4Å:- Chain p: G.2, A.3
- Chain t: V.5, T.28
1 PLIP interactions:1 interactions with chain t- Hydrogen bonds: t:T.28
MYR.238: 4 residues within 4Å:- Chain t: G.2, A.3
- Chain x: V.5, T.28
1 PLIP interactions:1 interactions with chain x- Hydrogen bonds: x:T.28
MYR.255: 4 residues within 4Å:- Chain h: V.5, T.28
- Chain x: G.2, A.3
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zocher, G. et al., A sialic Acid binding site in a human picornavirus. Plos Pathog. (2014)
- Release Date
- 2014-11-05
- Peptides
- Coxsackievirus capsid protein VP1: AEIMQUY26aeimqu
Coxsackievirus capsid protein VP2: BFJNRVZ37bfjnrv
Coxsackievirus capsid protein VP3: CGKOSW048cgkosw
Coxsackievirus capsid protein VP4: DHLPTX159dhlptx - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1Y
12
16
1a
1e
1i
1m
1q
1u
1B
2F
2J
2N
2R
2V
2Z
23
27
2b
2f
2j
2n
2r
2v
2C
3G
3K
3O
3S
3W
30
34
38
3c
3g
3k
3o
3s
3w
3D
4H
4L
4P
4T
4X
41
45
49
4d
4h
4l
4p
4t
4x
4
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- hetero-15-15-15-15-mer
- Ligands
- 15 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 30 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
- 75 x CA: CALCIUM ION(Non-covalent)
- 105 x CL: CHLORIDE ION(Non-functional Binders)
- 15 x MG: MAGNESIUM ION(Non-covalent)
- 15 x MYR: MYRISTIC ACID(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zocher, G. et al., A sialic Acid binding site in a human picornavirus. Plos Pathog. (2014)
- Release Date
- 2014-11-05
- Peptides
- Coxsackievirus capsid protein VP1: AEIMQUY26aeimqu
Coxsackievirus capsid protein VP2: BFJNRVZ37bfjnrv
Coxsackievirus capsid protein VP3: CGKOSW048cgkosw
Coxsackievirus capsid protein VP4: DHLPTX159dhlptx - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1Y
12
16
1a
1e
1i
1m
1q
1u
1B
2F
2J
2N
2R
2V
2Z
23
27
2b
2f
2j
2n
2r
2v
2C
3G
3K
3O
3S
3W
30
34
38
3c
3g
3k
3o
3s
3w
3D
4H
4L
4P
4T
4X
41
45
49
4d
4h
4l
4p
4t
4x
4