SMTL ID : 4q6b.1

Crystal Structure of ABC Transporter Substrate-Binding Protein fromDesulfitobacterium hafniense complex with Leu

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x LEU: LEUCINE(Non-covalent)

LEU.1: 9 residues within 4Å: Chain A: R.82, N.83, S.84, A.105, S.106, T.107, N.231, S.232, Y.285 10 PLIP interactions: 9 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:Y.285 Hydrogen bonds: A:S.84, A:T.107, A:T.107, A:T.107, A:S.108, A:N.231, L.1 Water bridges: A:S.84, A:F.85

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: A.97 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:A.97, H2O.2, H2O.2, H2O.7, H2O.7 CA.3: 1 residues within 4Å: Chain A: G.170 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:G.170, H2O.1, H2O.1, H2O.7, H2O.8 CA.4: 2 residues within 4Å: Chain A: D.175, R.176 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.175, A:R.176, H2O.1, H2O.1, H2O.7

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: F.12, V.51, N.72, G.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.72, A:N.72 EDO.6: 7 residues within 4Å: Chain A: L.158, K.205, T.206, G.230, N.231, S.232, W.233 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.204, A:G.230, A:S.232 Water bridges: A:K.205, A:G.230, A:N.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of ABC Transporter Substrate-Binding Protein fromDesulfitobacterium hafniense complex with Leu. To be Published (2014)

Release Date

2014-07-02

Peptides

Extracellular ligand-binding receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Extracellular ligand-binding receptor

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