SMTL ID : 4q6k.2 (1 other biounit)

Crystal structure of a putative neuraminidase (BACCAC_01090) from Bacteroides caccae ATCC 43185 at 1.90 A resolution (PSI Community Target)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: L.211, D.253, W.281, F.325 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.211, A:A.280, A:E.380 EDO.2: 5 residues within 4Å: Chain A: Y.360, S.361, K.362, D.363, T.367 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.361, A:K.362, A:D.363 EDO.3: 3 residues within 4Å: Chain A: R.332, S.436, M.496 No protein-ligand interaction detected (PLIP) EDO.4: 8 residues within 4Å: Chain A: S.83, H.84, G.488, W.489, E.507, S.508, A.511, H.512 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.83, A:S.83, A:W.489 Water bridges: A:E.507, A:H.512 EDO.5: 7 residues within 4Å: Chain B: K.300, S.301, T.302, D.303, T.307, W.308, S.309 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.302, B:D.303, B:D.303, B:T.307 EDO.6: 5 residues within 4Å: Chain B: R.332, I.334, I.435, S.436, M.496 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.335 EDO.7: 5 residues within 4Å: Chain B: R.185, R.204, S.208, D.210, W.489 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.185, B:R.204 EDO.8: 5 residues within 4Å: Chain B: Y.360, S.361, K.362, D.363, T.367 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.361, B:K.362, B:D.363, B:T.367 EDO.9: 4 residues within 4Å: Chain B: D.253, W.281, F.325, L.327 2 PLIP interactions: 2 interactions with chain B Water bridges: B:A.280, B:E.380 EDO.10: 5 residues within 4Å: Chain B: Y.205, H.214, D.216, L.234, A.237 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.214 EDO.11: 5 residues within 4Å: Chain B: L.234, P.235, W.308, S.309, E.310 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.234, B:E.310 Water bridges: B:W.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative neuraminidase (BACCAC_01090) from Bacteroides caccae ATCC 43185 at 1.90 A resolution. To be published

Release Date

2014-10-01

Peptides

BNR/Asp-box repeat protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

BNR/Asp-box repeat protein

Related Entries With Identical Sequence