SMTL ID : 4q6w.1 (1 other biounit)

Crystal Structure of Periplasmic Binding Protein type 1 from Bordetella pertussis Tohama I complexed with 3-Hydroxy Benzoic Acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x 3HB: 3-HYDROXYBENZOIC ACID(Non-covalent)

3HB.1: 10 residues within 4Å: Chain A: F.45, G.107, S.108, I.129, A.130, Q.131, Y.184, L.237, G.262, I.325 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.129, A:Q.131, A:Y.184, A:Y.184, A:L.237 Hydrogen bonds: A:S.108, A:Q.131, A:Q.131, A:G.262 Water bridges: A:G.109, A:Q.131, A:Y.184 pi-Stacking: A:F.45

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: N.157, E.160, A.161, M.164, Y.184, G.188, L.192, I.235, S.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.157, A:E.160, A:L.192 GOL.6: 7 residues within 4Å: Chain A: E.339, R.342, L.343, S.358, I.359, K.360, Y.362 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.339, A:R.342, A:S.358, A:K.360

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: I.30, I.66, N.67, K.69, I.341, N.345, S.346 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.67, A:K.69, A:N.345 EDO.4: 3 residues within 4Å: Chain A: A.206, T.207, R.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.207, A:R.223, A:R.223 EDO.5: 3 residues within 4Å: Chain A: Q.59, W.60, K.63 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.63 Water bridges: A:Q.59, A:W.60, A:K.63, A:N.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Periplasmic Binding Protein type 1 from Bordetella pertussis Tohama I complexed with 3-Hydroxy Benzoic Acid. To be Published (2014)

Release Date

2014-07-02

Peptides

Putative leu/ile/val-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative leu/ile/val-binding protein

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