SMTL ID : 4q6w.2 (1 other biounit)

Crystal Structure of Periplasmic Binding Protein type 1 from Bordetella pertussis Tohama I complexed with 3-Hydroxy Benzoic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x 3HB: 3-HYDROXYBENZOIC ACID(Non-covalent)

3HB.1: 10 residues within 4Å: Chain A: F.45, G.107, S.108, I.129, A.130, Q.131, Y.184, L.237, G.262, I.325 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.129, A:Q.131, A:L.237 Hydrogen bonds: A:S.108, A:Q.131, A:Q.131, A:T.132 Water bridges: A:G.109, A:I.129, A:Q.131, A:L.155, A:G.262 pi-Stacking: A:F.45, A:Y.184

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.246, R.250 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.250 Salt bridges: A:R.246, A:R.250

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: I.66, N.67, K.69, I.341, N.345, S.346 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Periplasmic Binding Protein type 1 from Bordetella pertussis Tohama I complexed with 3-Hydroxy Benzoic Acid. To be Published (2014)

Release Date

2014-07-02

Peptides

Putative leu/ile/val-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putative leu/ile/val-binding protein

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