SMTL ID : 4q8m.1

tRNA-Guanine Transglycosylase (TGT) Mutant V262T Apo Structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.320, C.322, C.325, H.351 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.320, A:C.322, A:C.325, A:H.351 ZN.10: 4 residues within 4Å: Chain B: C.320, C.322, C.325, H.351 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.320, B:C.322, B:C.325, B:H.351

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Q.119, S.120, R.176 Ligand excluded by PLIP GOL.3: 7 residues within 4Å: Chain A: T.29, G.30, T.31, R.40, T.41, R.364, S.368 Ligand excluded by PLIP GOL.4: 6 residues within 4Å: Chain A: P.58, E.59, G.96, W.97, D.98, R.99 Ligand excluded by PLIP GOL.5: 5 residues within 4Å: Chain A: A.63, H.321, C.322, A.323, E.350 Ligand excluded by PLIP GOL.6: 7 residues within 4Å: Chain A: W.298, E.319, K.362, F.375, D.378, F.379, R.382 Ligand excluded by PLIP GOL.7: 5 residues within 4Å: Chain A: F.16, S.17, F.18, D.256, K.257 Ligand excluded by PLIP GOL.8: 6 residues within 4Å: Chain A: Y.108, G.231, G.232, L.233, V.235, G.263 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain A: A.307, S.310, H.334, R.338 Chain B: R.84 Ligand excluded by PLIP GOL.11: 3 residues within 4Å: Chain B: Q.119, S.120, R.176 Ligand excluded by PLIP GOL.12: 7 residues within 4Å: Chain B: T.29, G.30, T.31, R.40, T.41, R.364, S.368 Ligand excluded by PLIP GOL.13: 6 residues within 4Å: Chain B: P.58, E.59, G.96, W.97, D.98, R.99 Ligand excluded by PLIP GOL.14: 5 residues within 4Å: Chain B: A.63, H.321, C.322, A.323, E.350 Ligand excluded by PLIP GOL.15: 7 residues within 4Å: Chain B: W.298, E.319, K.362, F.375, D.378, F.379, R.382 Ligand excluded by PLIP GOL.16: 5 residues within 4Å: Chain B: F.16, S.17, F.18, D.256, K.257 Ligand excluded by PLIP GOL.17: 6 residues within 4Å: Chain B: Y.108, G.231, G.232, L.233, V.235, G.263 Ligand excluded by PLIP GOL.18: 5 residues within 4Å: Chain A: R.84 Chain B: A.307, S.310, H.334, R.338 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neeb, M. et al., Creating a Resistance Model for TGT: The Effect of Mutations on Flexible lin-Benzoguanine Substituents. To be Published

Release Date

2015-05-20

Peptides

Queuine tRNA-ribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Queuine tRNA-ribosyltransferase

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