- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 2ZW: 3-(2-chlorophenyl)-5-methyl-N-[4-(propan-2-yl)phenyl]-1,2-oxazole-4-carboxamide(Non-covalent)
- 2 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)
FPP.2: 17 residues within 4Å:- Chain A: M.21, D.22, G.23, N.24, G.25, R.26, R.35, H.39, G.42, M.43, L.46, A.65, R.73, I.81, F.137
- Ligands: 2ZW.1, CD.3
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:H.39, A:A.65, A:I.81, A:F.137
- Hydrogen bonds: A:G.23, A:N.24, A:G.25, A:R.26, A:R.35
- Water bridges: A:R.26, A:R.73
- Salt bridges: A:R.26, A:R.35, A:H.39, A:R.73
FPP.13: 18 residues within 4Å:- Chain B: M.21, D.22, G.23, N.24, G.25, R.26, R.35, H.39, G.42, M.43, L.46, A.65, N.70, R.73, I.81, F.137
- Ligands: 2ZW.12, CD.14
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:H.39, B:A.65, B:I.81, B:F.137
- Hydrogen bonds: B:G.23, B:N.24, B:G.25, B:R.26, B:R.35
- Water bridges: B:R.26, B:R.73
- Salt bridges: B:R.26, B:R.35, B:R.73
- 15 x CD: CADMIUM ION(Non-covalent)
CD.3: 2 residues within 4Å:- Chain A: D.22
- Ligands: FPP.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.22, H2O.1, H2O.1, H2O.2
CD.4: 2 residues within 4Å:- Chain A: E.108, D.110
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.108, A:D.110, A:D.110, H2O.1
CD.5: 1 residues within 4Å:- Chain A: E.170
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.170, A:E.170, H2O.1, H2O.1, H2O.8
CD.6: 1 residues within 4Å:- Chain A: D.185
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.185, H2O.2, H2O.3, H2O.3
CD.7: 1 residues within 4Å:- Chain A: D.90
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.90, H2O.8, H2O.8, H2O.8
CD.8: 2 residues within 4Å:- Chain A: E.44
- Ligands: CD.10
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.44, A:E.44
CD.9: 2 residues within 4Å:- Chain A: E.198, R.200
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.198, H2O.6
CD.10: 3 residues within 4Å:- Chain A: K.51, E.95
- Ligands: CD.8
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.95
CD.11: 1 residues within 4Å:- Chain A: D.157
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.157, A:D.157, H2O.6, H2O.7
CD.14: 2 residues within 4Å:- Chain B: D.22
- Ligands: FPP.13
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.22, H2O.9, H2O.10, H2O.10
CD.15: 1 residues within 4Å:- Chain B: D.185
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.185, H2O.9, H2O.9, H2O.16
CD.16: 2 residues within 4Å:- Chain B: E.69, S.202
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.69, B:E.69, H2O.9, H2O.9, H2O.12
CD.17: 1 residues within 4Å:- Chain B: E.170
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.170, B:E.170, H2O.1, H2O.15
CD.18: 2 residues within 4Å:- Chain A: H.240
- Chain B: E.198
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: B:E.198, B:E.198, A:H.240, H2O.11, H2O.13
CD.19: 1 residues within 4Å:- Chain B: D.157
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.157, B:D.157, H2O.13, H2O.13, H2O.14
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Danley, D.E. et al., Discovery and structural characterization of an allosteric inhibitor of bacterial cis-prenyltransferase. Protein Sci. (2015)
- Release Date
- 2014-10-15
- Peptides
- Isoprenyl transferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 2ZW: 3-(2-chlorophenyl)-5-methyl-N-[4-(propan-2-yl)phenyl]-1,2-oxazole-4-carboxamide(Non-covalent)
- 2 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)
- 15 x CD: CADMIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Danley, D.E. et al., Discovery and structural characterization of an allosteric inhibitor of bacterial cis-prenyltransferase. Protein Sci. (2015)
- Release Date
- 2014-10-15
- Peptides
- Isoprenyl transferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B