SMTL ID : 4q9n.2 (1 other biounit)

Crystal structure of Chlamydia trachomatis enoyl-ACP reductase (FabI) in complex with NADH and AFN-1252

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 23 residues within 4Å: Chain A: G.17, G.21, Y.22, W.42, M.78, D.79, A.80, S.81, S.126, L.127, A.128, T.151, L.176, T.177, K.196, A.223, G.224, P.225, L.226, S.228, R.229, A.230 Ligands: 0WE.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:A.223 Hydrogen bonds: A:Y.22, A:D.79, A:A.80, A:S.81, A:L.127, A:A.128, A:K.196, A:L.226, A:L.226, A:S.228, A:S.228, A:A.230 Water bridges: A:G.23, A:W.42, A:S.81, A:L.127, A:T.151, A:R.229 pi-Stacking: A:Y.22, A:W.42, A:W.42, A:W.42 NAI.3: 27 residues within 4Å: Chain B: G.17, G.21, Y.22, W.42, I.45, M.78, D.79, A.80, S.81, S.126, L.127, A.128, N.129, T.151, L.176, T.177, Y.178, K.196, A.223, G.224, P.225, L.226, S.228, R.229, A.230, I.237 Ligands: 0WE.4 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:Y.178, B:A.223 Hydrogen bonds: B:Y.22, B:D.79, B:A.80, B:S.81, B:L.127, B:A.128, B:K.196, B:L.226, B:L.226, B:S.228, B:S.228, B:A.230 Water bridges: B:G.15, B:G.17, B:G.23, B:S.81, B:L.127, B:R.229, B:R.229 pi-Stacking: B:Y.22, B:W.42, B:W.42, B:W.42 NAI.5: 26 residues within 4Å: Chain C: G.15, I.16, G.17, G.21, Y.22, W.42, I.45, M.78, D.79, A.80, S.81, S.126, L.127, A.128, T.151, L.176, T.177, K.196, A.223, G.224, P.225, L.226, S.228, R.229, A.230 Ligands: 0WE.6 24 PLIP interactions: 24 interactions with chain C Hydrophobic interactions: C:A.223 Hydrogen bonds: C:G.15, C:Y.22, C:D.79, C:A.80, C:L.127, C:A.128, C:K.196, C:L.226, C:L.226, C:S.228, C:S.228, C:A.230 Water bridges: C:G.17, C:G.23, C:W.42, C:S.81, C:L.127, C:R.229, C:R.229 pi-Stacking: C:Y.22, C:W.42, C:W.42, C:W.42 NAI.7: 23 residues within 4Å: Chain D: G.17, G.21, Y.22, W.42, D.79, A.80, S.81, S.126, L.127, A.128, N.129, T.151, L.176, T.177, K.196, A.223, G.224, P.225, L.226, S.228, R.229, A.230 Ligands: 0WE.8 26 PLIP interactions: 26 interactions with chain D Hydrophobic interactions: D:A.223 Hydrogen bonds: D:Y.22, D:D.79, D:A.80, D:S.81, D:L.127, D:A.128, D:K.196, D:L.226, D:L.226, D:S.228, D:S.228, D:A.230 Water bridges: D:G.15, D:G.17, D:D.18, D:D.18, D:G.23, D:W.42, D:S.81, D:L.127, D:R.229 pi-Stacking: D:Y.22, D:W.42, D:W.42, D:W.42

4 x 0WE: N-methyl-N-[(3-methyl-1-benzofuran-2-yl)methyl]-3-(7-oxo-5,6,7,8-tetrahydro-1,8-naphthyridin-3-yl)propanamide(Non-covalent)

0WE.2: 14 residues within 4Å: Chain A: N.129, S.130, I.133, Y.178, V.185, G.187, Y.188, M.192, A.230, A.233, I.234, F.236, M.240 Ligands: NAI.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.133, A:Y.178, A:V.185, A:Y.188, A:A.230, A:A.233, A:F.236, A:F.236 Hydrogen bonds: A:S.130, A:S.130, A:Y.188 Water bridges: A:I.133 pi-Stacking: A:Y.188 0WE.4: 14 residues within 4Å: Chain B: N.129, S.130, I.133, Y.178, V.185, G.187, Y.188, M.192, A.230, A.233, I.234, F.236, M.240 Ligands: NAI.3 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.133, B:Y.178, B:V.185, B:Y.188, B:A.230, B:A.233, B:F.236, B:F.236 Hydrogen bonds: B:S.130, B:S.130 Water bridges: B:N.129 pi-Stacking: B:Y.188 0WE.6: 13 residues within 4Å: Chain C: N.129, S.130, I.133, Y.178, G.187, Y.188, M.192, A.230, A.233, I.234, F.236, M.240 Ligands: NAI.5 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:I.133, C:Y.178, C:Y.188, C:A.230, C:A.233, C:F.236, C:F.236 Hydrogen bonds: C:S.130, C:S.130, C:Y.188 Water bridges: C:N.129, C:N.129 0WE.8: 14 residues within 4Å: Chain D: N.129, S.130, I.133, Y.178, V.185, G.187, Y.188, M.192, A.230, A.233, I.234, F.236, M.240 Ligands: NAI.7 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:I.133, D:Y.178, D:V.185, D:Y.188, D:A.230, D:A.233, D:F.236, D:F.236 Hydrogen bonds: D:S.130, D:S.130 Water bridges: D:I.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, J. et al., Type II Fatty Acid Synthesis Is Essential for the Replication of Chlamydia trachomatis. J.Biol.Chem. (2014)

Release Date

2014-06-25

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Enoyl-[acyl-carrier-protein] reductase [NADH]

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