SMTL ID : 4qa1.4 (3 other biounits)

Crystal structure of A188T HDAC8 in complex with M344

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

2 x K: POTASSIUM ION(Non-covalent)

K.1: 7 residues within 4Å: Chain A: D.176, L.177, D.178, H.180, S.199, L.200, H.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.176, A:D.176, A:D.178, A:H.180, A:S.199 K.2: 5 residues within 4Å: Chain A: F.189, T.192, V.195, Y.225, S.226 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:F.189, A:T.192, A:V.195, H2O.1, H2O.1

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: D.178, H.180, D.267 Ligands: B3N.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.178, A:H.180, A:D.267

1 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)

B3N.4: 12 residues within 4Å: Chain A: Y.100, H.142, H.143, G.151, F.152, D.178, H.180, F.208, D.267, G.304, Y.306 Ligands: ZN.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.152, A:F.152, A:F.208, A:F.208 Hydrogen bonds: A:H.143, A:Y.306 Water bridges: A:D.101, A:D.101, A:Q.263, A:Q.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Decroos, C. et al., Compromised Structure and Function of HDAC8 Mutants Identified in Cornelia de Lange Syndrome Spectrum Disorders. Acs Chem.Biol. (2014)

Release Date

2014-08-06

Peptides

Histone deacetylase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Histone deacetylase 8

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