SMTL ID : 4qa3.1 (2 other biounits)

Crystal structure of T311M HDAC8 in complex with Trichostatin A (TSA)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

monomer

Ligands

1 x TSN: TRICHOSTATIN A(Non-covalent)

TSN.1: 11 residues within 4Å: Chain A: H.142, H.143, G.151, F.152, D.178, H.180, F.208, D.267, Y.306 Ligands: ZN.2, GOL.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.152, A:F.152, A:F.208 Hydrogen bonds: A:H.142, A:H.143, A:G.304

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: D.178, H.180, D.267 Ligands: TSN.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.178, A:H.180, A:D.267

2 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: D.176, D.178, H.180, S.199, L.200, H.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.176, A:D.176, A:D.178, A:H.180, A:L.200 K.4: 5 residues within 4Å: Chain A: F.189, T.192, V.195, Y.225, S.226 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:F.189, A:V.195, H2O.1, H2O.1

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: R.37, G.140, W.141, H.142, G.151, G.303, G.304, Y.306 Ligands: TSN.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.140, A:G.151, A:Y.306 GOL.6: 4 residues within 4Å: Chain A: A.270, G.271, I.348, T.349 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Decroos, C. et al., Compromised Structure and Function of HDAC8 Mutants Identified in Cornelia de Lange Syndrome Spectrum Disorders. Acs Chem.Biol. (2014)

Release Date

2014-08-06

Peptides

Histone deacetylase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone deacetylase 8

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