SMTL ID : 4qao.2 (2 other biounits)

Lysine-ligated cytochrome c with F82H

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.1: 27 residues within 4Å: Chain A: R.16, C.17, Q.19, C.20, H.21, V.31, G.32, P.33, L.35, I.38, S.43, G.44, Y.49, Y.51, T.52, D.53, I.56, W.62, M.67, Y.70, L.71, K.76, I.78, G.86, L.97 Chain B: P.79, G.80 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:P.33, A:L.35, A:Y.51, A:I.56, A:W.62, A:Y.70, A:L.71, A:L.97 Hydrogen bonds: A:G.44, A:T.52, A:D.53 Water bridges: A:Q.45, A:A.46, A:Y.49, A:T.52 Metal complexes: A:H.21 HEM.2: 27 residues within 4Å: Chain A: P.79, G.80 Chain B: R.16, C.17, Q.19, C.20, H.21, V.31, G.32, P.33, L.35, I.38, S.43, G.44, Y.49, Y.51, T.52, D.53, I.56, W.62, M.67, Y.70, L.71, K.76, I.78, G.86, L.97 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:P.33, B:L.35, B:Y.51, B:I.56, B:W.62, B:Y.70, B:L.71, B:L.97 Hydrogen bonds: B:G.44, B:Y.51, B:T.52, B:D.53 Water bridges: B:Q.45, B:A.46 Metal complexes: B:H.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amacher, J.F., Understanding PDZ Affinity and Selectivity: All Residues Considered. Thesis (2014)

Release Date

2015-08-05

Peptides

Cytochrome c iso-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Cytochrome c iso-1

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