SMTL ID : 4qc9.2 (1 other biounit)

Crystal structure of Vaccinia virus uracil-DNA glycosylase mutant 3GD4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.162, K.163, T.164, G.182, Y.183, H.184, A.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.163, A:T.164, A:G.182, A:H.184 SO4.4: 7 residues within 4Å: Chain B: G.162, K.163, T.164, G.182, Y.183, H.184, A.187 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.163, B:T.164, B:T.164, B:H.184 Water bridges: B:G.162, B:D.165

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: D.71, P.72, Y.73, P.81, F.82, N.123 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.73, A:F.82, A:N.123 Water bridges: A:T.78, A:E.83 EDO.3: 6 residues within 4Å: Chain B: D.71, P.72, Y.73, P.81, F.82, N.123 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.73, B:F.82, B:N.123 Water bridges: B:T.78, B:T.78, B:V.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sartmatova, D. et al., Crystal structure of Vaccinia virus uracil-DNA glycosylase mutant 3GD4. To be Published

Release Date

2015-05-13

Peptides

Uracil-DNA glycosylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Uracil-DNA glycosylase

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