SMTL ID : 4qd3.1

Crystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with 5-azacytidine at 1.89 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x 5AE: 4-amino-1-(beta-D-ribofuranosyl)-1,3,5-triazin-2(1H)-one(Non-covalent)

5AE.1: 11 residues within 4Å: Chain A: H.22, L.97, G.113, G.114, H.115, N.116, V.147, S.148, V.151, L.152 Ligands: GOL.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.113, A:G.114, A:N.116, A:N.116, A:S.148 Water bridges: A:H.22, A:S.148

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: D.95, E.96, L.97, D.98, H.112, G.113, G.114, H.115 Ligands: 5AE.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.95, A:L.97, A:D.98 Water bridges: A:D.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A. et al., Structural and binding studies of peptidyl-tRNA hydrolase from Pseudomonas aeruginosa provide a platform for the structure-based inhibitor design against peptidyl-tRNA hydrolase. Biochem.J. (2014)

Release Date

2014-06-25

Peptides

Peptidyl-tRNA hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-tRNA hydrolase

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