SMTL ID : 4qdv.2 (1 other biounit)

Dcps in complex with covalent ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: H.268, P.271, S.272, Y.273, H.277, H.279, R.294 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.272 Salt bridges: A:H.268, A:H.277, A:H.279, A:R.294 PO4.2: 6 residues within 4Å: Chain A: H.296, N.304, H.311, Y.312 Chain B: E.300 Ligands: PO4.4 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.304, A:Y.312, B:E.300 Salt bridges: A:H.296 PO4.4: 5 residues within 4Å: Chain B: H.296, N.304, H.311, Y.312 Ligands: PO4.2 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.304, B:H.311 Salt bridges: B:H.296 PO4.5: 8 residues within 4Å: Chain B: H.268, P.271, S.272, Y.273, H.277, H.279, R.294 Ligands: GOL.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.272, B:Y.273 Salt bridges: B:H.268, B:H.277, B:H.279, B:R.294

1 x 30U: 4-{[(2,4-diaminoquinazolin-5-yl)oxy]methyl}benzenesulfonic acid(Covalent)

30U.3: 17 residues within 4Å: Chain A: F.108, N.110, Y.113 Chain B: T.130, V.132, H.139, Y.143, W.175, E.185, R.188, I.203, P.204, D.205, L.206, I.219, Y.273 Ligands: GOL.6 12 PLIP interactions: 2 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:Y.113, A:Y.113, B:W.175, B:L.206, B:L.206 Hydrogen bonds: B:R.188, B:P.204, B:D.205, B:L.206 Salt bridges: B:E.185, B:D.205 pi-Stacking: B:W.175

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 12 residues within 4Å: Chain B: K.142, D.205, K.207, Y.217, H.268, S.272, Y.273, H.279, P.288, R.294 Ligands: 30U.3, PO4.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.142, B:K.142, B:D.205, B:K.207, B:S.272, B:R.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S., Dcps in complex with covalent ligands targeting Tyrosines. To be Published

Release Date

2015-05-20

Peptides

m7GpppX diphosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

m7GpppX diphosphatase

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