SMTL ID : 4qgh.1

S.aureus TMK in complex with potent inhibitor compound 47

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

2 x 32E: 2-(3-chlorophenoxy)-3-fluoro-4-{(1S)-3-methyl-1-[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]butyl}benzoic acid(Non-covalent)

32E.1: 13 residues within 4Å: Chain A: E.37, R.48, V.51, L.52, F.66, S.69, R.70, R.92, S.96, S.97, Y.100, Q.101 Chain B: H.172 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.48, A:R.92, A:Y.100 Hydrogen bonds: A:R.70, A:R.70, A:Q.101, A:Q.101 Salt bridges: A:R.48, B:H.172 pi-Stacking: A:F.66, A:F.66 32E.2: 14 residues within 4Å: Chain B: E.11, E.37, I.47, R.48, V.51, L.52, F.66, S.69, R.70, R.92, S.96, S.97, Y.100, Q.101 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:R.48, B:R.92, B:Y.100 Hydrogen bonds: B:R.70, B:R.70, B:Q.101, B:Q.101 Salt bridges: B:R.48 pi-Stacking: B:F.66, B:F.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawatkar, S.P. et al., Antibacterial inhibitors of gram-positive thymidylate kinase: structure-activity relationships and chiral preference of a new hydrophobic binding region. J.Med.Chem. (2014)

Release Date

2014-06-11

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate kinase

Related Entries With Identical Sequence