SMTL ID : 4qgr.1

Crystal structure of a DegT DnrJ EryC1 StrS aminotransferase from Brucella abortus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: D.246 No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: F.226, R.244 Chain B: Y.196 Ligands: PLP.5 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.244 Hydrophobic interactions: B:Y.196 ACT.4: 5 residues within 4Å: Chain A: F.92, Y.196 Chain B: F.226, R.244 Ligands: PLP.3 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.196 Water bridges: B:R.244 Salt bridges: B:R.244

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.3: 17 residues within 4Å: Chain A: N.65, G.66, T.67, L.70, T.91, F.92, A.94, T.95, V.144, D.170, A.172, Q.173, S.194, K.199, G.207 Chain B: N.242 Ligands: ACT.4 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.92, A:V.144, A:A.172 Hydrogen bonds: A:N.65, A:G.66, A:T.67, A:T.95, A:Q.173, A:S.194, A:S.194, A:K.199, B:N.242 Water bridges: A:T.67, A:D.206, A:Y.323, B:R.244 PLP.5: 17 residues within 4Å: Chain A: N.242 Chain B: N.65, G.66, T.67, L.70, T.91, F.92, A.94, T.95, V.144, D.170, A.172, Q.173, S.194, K.199, G.207 Ligands: ACT.2 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.92, B:V.144, B:A.172 Hydrogen bonds: B:N.65, B:G.66, B:T.67, B:T.67, B:Q.173, B:S.194, B:S.194, B:K.199, A:N.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a DegT DnrJ EryC1 StrS family protein from Bartonella abortus. TO BE PUBLISHED

Release Date

2014-06-18

Peptides

DegT/DnrJ/EryC1/StrS aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DegT/DnrJ/EryC1/StrS aminotransferase