SMTL ID : 4qhb.1 (2 other biounits)

Crystal structure of a putative hydrolase (BVU_2763) from Bacteroides vulgatus ATCC 8482 at 2.44 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-tetramer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.152, K.153, R.154 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.152, A:K.153, A:R.154 Water bridges: A:S.152 Salt bridges: A:R.154 SO4.5: 4 residues within 4Å: Chain B: W.78, K.80, W.192, T.193 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.78 Water bridges: B:W.192, B:T.193 Salt bridges: B:K.80 SO4.6: 7 residues within 4Å: Chain B: V.17, F.18, D.19, T.21, D.39, V.41, K.52 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.19, B:D.19, B:D.39 Salt bridges: B:K.52 SO4.10: 4 residues within 4Å: Chain C: W.78, K.80, W.192, T.193 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Water bridges: C:W.192, C:T.193, A:T.326 Salt bridges: C:K.80 SO4.11: 7 residues within 4Å: Chain C: V.17, F.18, D.19, T.21, D.39, V.41, K.52 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.19 Water bridges: C:D.39, C:D.39 Salt bridges: C:K.52

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: F.301, F.304 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.303 PEG.3: 2 residues within 4Å: Chain A: F.25, N.46 No protein-ligand interaction detected (PLIP) PEG.7: 6 residues within 4Å: Chain B: K.89, S.91, N.94, M.96, N.97, Y.184 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.89, B:N.94, B:N.97 PEG.8: 1 residues within 4Å: Chain B: W.311 No protein-ligand interaction detected (PLIP) PEG.9: 3 residues within 4Å: Chain B: P.22, R.26, F.30 No protein-ligand interaction detected (PLIP) PEG.12: 3 residues within 4Å: Chain C: P.22, R.26, F.30 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 8 residues within 4Å: Chain A: W.78, F.138, G.267, S.269, G.309, W.311, S.336 Chain B: I.320 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.309, A:S.336

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.13: 4 residues within 4Å: Chain C: K.89, S.91, N.94, Y.184 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a hypothetical protein (BVU_2763) from Bacteroides vulgatus ATCC 8482 at 2.44 A resolution. To be published

Release Date

2014-06-18

Peptides

Uncharacterized protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Uncharacterized protein

Related Entries With Identical Sequence