SMTL ID : 4qhw.1

Crystal structure of a putative two-domain sugar hydrolase (BACCAC_02064) from Bacteroides caccae ATCC 43185 at 1.35 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: S.200, W.202, F.233, E.236, Q.241 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.200, A:Q.241 Water bridges: A:E.236, A:Q.241 EDO.2: 7 residues within 4Å: Chain A: H.61, S.62, E.63, N.76, S.106, K.107, S.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.106 EDO.3: 3 residues within 4Å: Chain A: Q.19, Q.20, D.21 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.19, A:Q.20, A:Q.20, A:D.21 Water bridges: A:D.21, A:D.21 EDO.4: 2 residues within 4Å: Chain A: N.294, W.296 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.294 Water bridges: A:N.294, A:W.296 EDO.5: 6 residues within 4Å: Chain A: G.321, N.322, R.334, N.362, R.363, T.387 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.322, A:R.334, A:N.362, A:T.387, A:T.387 Water bridges: A:R.334 EDO.6: 3 residues within 4Å: Chain A: T.17, R.99, Y.313 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.17, A:R.99, A:R.99 EDO.7: 2 residues within 4Å: Chain A: T.26, Q.27 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.27, A:Q.27 Water bridges: A:R.28 EDO.8: 5 residues within 4Å: Chain A: E.156, W.157, R.326, W.395 Ligands: SO4.18 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.157, A:Q.259, A:R.326, A:R.326 Water bridges: A:E.156, A:W.395 EDO.9: 4 residues within 4Å: Chain A: F.133, S.134, D.135, Y.136 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.134, A:D.135, A:D.135, A:Y.136

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 6 residues within 4Å: Chain A: F.180, G.181, G.183, Y.184, W.202, H.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.202 Water bridges: A:H.301 PEG.11: 4 residues within 4Å: Chain A: F.133, W.137, A.344, T.345 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.345 PEG.12: 5 residues within 4Å: Chain A: Q.355, K.367, F.372, N.373, E.374 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.355, A:K.367, A:K.367, A:N.373, A:E.374 Water bridges: A:F.371, A:N.373

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.13: 3 residues within 4Å: Chain A: R.18, K.37, Q.103 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.103 Water bridges: A:R.18, A:R.18, A:R.18, A:Q.103 Salt bridges: A:R.18, A:K.37 SO4.14: 1 residues within 4Å: Chain A: K.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.19 Water bridges: A:N.35, A:N.35 SO4.15: 1 residues within 4Å: Chain A: K.65 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.65, A:K.74 SO4.16: 2 residues within 4Å: Chain A: R.93, Q.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.94 Water bridges: A:R.93, A:R.93 Salt bridges: A:R.93 SO4.17: 3 residues within 4Å: Chain A: V.130, K.131, D.132 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.132 Water bridges: A:N.13, A:F.133, A:F.133, A:F.133, A:F.133, A:D.135, A:D.135 SO4.18: 4 residues within 4Å: Chain A: E.156, Q.259, R.261 Ligands: EDO.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.259, A:Q.259 Salt bridges: A:R.261

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.19: 5 residues within 4Å: Chain A: T.193, E.194, R.195, Y.246, P.247 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a hypothetical protein (BACCAC_02064) from Bacteroides caccae ATCC 43185 at 1.35 A resolution. To be published

Release Date

2014-07-23

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

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