SMTL ID : 4qi5.1

Dehydrogenase domain of Myriococcum thermophilum cellobiose dehydrogenase with bound cellobionolactam, MtDH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.178, R.179, E.363, V.365, V.371 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain A: F.40, T.49, N.215, R.237, D.238, G.239 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.40

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 36 residues within 4Å: Chain A: V.13, G.14, G.15, G.16, A.17, G.18, E.37, K.38, M.87, G.89, C.90, V.91, G.94, G.95, T.96, V.98, N.99, A.100, G.101, L.102, T.216, S.217, V.218, S.257, A.258, G.259, I.266, N.478, H.479, D.515, A.516, N.526, P.527, T.528, I.531 Ligands: ABL.4 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:N.478 Hydrogen bonds: A:G.15, A:A.17, A:G.18, A:K.38, A:G.89, A:G.94, A:G.95, A:G.95, A:N.99, A:A.100, A:L.102, A:L.102, A:V.218, A:V.218, A:A.516, A:T.528, A:T.528, A:T.528 Water bridges: A:G.16, A:G.19, A:K.38, A:T.260, A:T.260, A:S.529 pi-Cation interactions: A:H.479

1 x ABL: (2R,3R,4R,5R)-4,5-dihydroxy-2-(hydroxymethyl)-6-oxopiperidin-3-yl beta-D-glucopyranoside(Non-covalent)

ABL.4: 14 residues within 4Å: Chain A: N.70, W.73, A.100, P.354, I.356, T.377, R.379, E.381, Y.397, S.477, N.478, H.479, N.526 Ligands: FAD.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.70, A:R.379, A:R.379, A:E.381, A:Y.397, A:N.478, A:H.479, A:N.526 Water bridges: A:R.379, A:R.379, A:E.381, A:E.381 Salt bridges: A:R.379

2 x CD: CADMIUM ION(Non-covalent)

CD.5: 1 residues within 4Å: Chain A: D.117 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.117 CD.6: 1 residues within 4Å: Chain A: E.234 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.234, A:E.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, T.C. et al., Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation. Nat Commun (2015)

Release Date

2015-07-15

Peptides

Cellobiose dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellobiose dehydrogenase

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