- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 2 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: R.56, H.89, T.90, D.91, V.92, E.93
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.91, A:V.92, A:E.93
- Salt bridges: A:R.56
SO4.3: 5 residues within 4Å:- Chain A: H.48
- Chain B: H.48
- Chain D: H.48
- Chain F: H.48
- Ligands: TAR.12
6 PLIP interactions:2 interactions with chain B, 1 interactions with chain D, 2 interactions with chain F, 1 interactions with chain A- Hydrogen bonds: B:H.48, F:H.48
- Salt bridges: B:H.48, D:H.48, F:H.48, A:H.48
SO4.4: 6 residues within 4Å:- Chain A: K.20, H.48, K.80
- Chain F: K.20
- Ligands: GOL.20, GOL.21
6 PLIP interactions:3 interactions with chain F, 3 interactions with chain A- Water bridges: F:K.20, F:K.20
- Salt bridges: F:K.20, A:K.20, A:H.48, A:K.80
SO4.5: 5 residues within 4Å:- Chain A: E.44, K.45, P.97
- Chain F: Y.43, K.45
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:K.45
SO4.8: 2 residues within 4Å:- Chain B: K.45
- Chain F: K.45
4 PLIP interactions:1 interactions with chain F, 3 interactions with chain B- Salt bridges: F:K.45, B:K.45
- Water bridges: B:K.45, B:K.45
SO4.9: 5 residues within 4Å:- Chain B: V.33, V.38, M.39, L.40
- Chain F: T.90
4 PLIP interactions:1 interactions with chain F, 3 interactions with chain B- Hydrogen bonds: F:T.90, B:L.40
- Water bridges: B:V.33, B:V.38
SO4.10: 7 residues within 4Å:- Chain B: K.45, I.46
- Chain C: K.45
- Chain D: K.45, G.47
- Ligands: PGO.1, PGO.11
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain D- Salt bridges: C:K.45, D:K.45
- Hydrogen bonds: D:G.47
SO4.15: 4 residues within 4Å:- Chain D: R.56, D.91, V.92, E.93
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:D.91, D:D.91, D:V.92, D:E.93
- Salt bridges: D:R.56
SO4.18: 3 residues within 4Å:- Chain C: K.45
- Chain E: K.45
- Ligands: PGO.11
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain E- Water bridges: C:K.45, E:K.45
- Salt bridges: C:K.45, E:K.45
SO4.19: 6 residues within 4Å:- Chain A: K.45, G.47
- Chain E: I.46
- Chain F: K.45
- Ligands: PGO.1, PGO.11
4 PLIP interactions:2 interactions with chain A, 1 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: A:G.47, E:I.46
- Salt bridges: A:K.45, F:K.45
- 1 x K: POTASSIUM ION(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 3 residues within 4Å:- Chain B: H.48, K.80
- Chain D: K.20
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.20
GOL.14: 4 residues within 4Å:- Chain D: G.42, Y.43, E.44, P.97
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Y.43, D:P.97
GOL.16: 3 residues within 4Å:- Chain E: A.34, S.35, A.36
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:A.36
GOL.17: 4 residues within 4Å:- Chain A: K.20
- Chain E: K.20, H.48, K.80
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:K.20, E:K.80, A:K.20
GOL.20: 5 residues within 4Å:- Chain A: H.48
- Chain C: H.48
- Chain F: H.48
- Ligands: SO4.4, TAR.13
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:H.48, A:H.48
GOL.21: 4 residues within 4Å:- Chain A: K.80
- Chain F: K.20, G.21
- Ligands: SO4.4
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain A- Hydrogen bonds: F:K.20
- Water bridges: F:T.23, A:E.18
- 2 x TAR: D(-)-TARTARIC ACID(Non-covalent)
TAR.12: 13 residues within 4Å:- Chain A: G.47, H.48
- Chain B: G.47, H.48
- Chain C: G.47, H.48
- Chain D: G.47, H.48
- Chain E: G.47, H.48
- Chain F: G.47, H.48
- Ligands: SO4.3
9 PLIP interactions:2 interactions with chain D, 1 interactions with chain B, 2 interactions with chain C, 2 interactions with chain F, 1 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: D:H.48, B:H.48, C:H.48, F:H.48, E:H.48, A:H.48
- Water bridges: D:G.47, C:G.49, F:G.49
TAR.13: 6 residues within 4Å:- Chain C: K.20
- Chain D: K.20, H.48, L.50, K.80
- Ligands: GOL.20
8 PLIP interactions:5 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:K.20, C:K.20
- Salt bridges: D:K.20, D:H.48, D:H.48, D:K.80, C:K.20, C:K.20
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chowdhury, C. et al., Selective molecular transport through the protein shell of a bacterial microcompartment organelle. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-02-18
- Peptides
- Propanediol utilization protein PduA: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 2 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 1 x K: POTASSIUM ION(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 2 x TAR: D(-)-TARTARIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chowdhury, C. et al., Selective molecular transport through the protein shell of a bacterial microcompartment organelle. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-02-18
- Peptides
- Propanediol utilization protein PduA: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F