SMTL ID : 4qkq.3 (2 other biounits)

RadA from Methanococcus Voltae in complex with copper phthalocyanine tetrasulfonate inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-12-mer

Ligands

30 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 8 residues within 4Å: Chain A: G.235, K.236, K.239, I.256 Chain J: G.235, K.236, K.239, I.256 Ligand excluded by PLIP NO3.2: 7 residues within 4Å: Chain A: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.3 Ligand excluded by PLIP NO3.3: 8 residues within 4Å: Chain A: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.2 Ligand excluded by PLIP NO3.4: 7 residues within 4Å: Chain B: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.5 Ligand excluded by PLIP NO3.5: 8 residues within 4Å: Chain B: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.4 Ligand excluded by PLIP NO3.6: 8 residues within 4Å: Chain C: G.235, K.236, K.239, I.256 Chain H: G.235, K.236, K.239, I.256 Ligand excluded by PLIP NO3.7: 7 residues within 4Å: Chain C: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.8 Ligand excluded by PLIP NO3.8: 8 residues within 4Å: Chain C: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.7 Ligand excluded by PLIP NO3.9: 8 residues within 4Å: Chain D: G.235, K.236, K.239, I.256 Chain G: G.235, K.236, K.239, I.256 Ligand excluded by PLIP NO3.10: 7 residues within 4Å: Chain D: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.11 Ligand excluded by PLIP NO3.11: 8 residues within 4Å: Chain D: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.10 Ligand excluded by PLIP NO3.12: 9 residues within 4Å: Chain E: G.235, K.236, K.239, I.256 Chain L: G.235, K.236, K.239, V.241, I.256 Ligand excluded by PLIP NO3.13: 7 residues within 4Å: Chain E: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.14 Ligand excluded by PLIP NO3.14: 8 residues within 4Å: Chain E: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.13 Ligand excluded by PLIP NO3.15: 8 residues within 4Å: Chain F: G.235, K.236, K.239, I.256 Chain K: G.235, K.236, K.239, I.256 Ligand excluded by PLIP NO3.16: 7 residues within 4Å: Chain F: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.17 Ligand excluded by PLIP NO3.17: 8 residues within 4Å: Chain F: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.16 Ligand excluded by PLIP NO3.19: 7 residues within 4Å: Chain G: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.20 Ligand excluded by PLIP NO3.20: 8 residues within 4Å: Chain G: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.19 Ligand excluded by PLIP NO3.21: 7 residues within 4Å: Chain H: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.22 Ligand excluded by PLIP NO3.22: 8 residues within 4Å: Chain H: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.21 Ligand excluded by PLIP NO3.23: 8 residues within 4Å: Chain B: G.235, K.236, K.239, I.256 Chain I: G.235, K.236, K.239, I.256 Ligand excluded by PLIP NO3.24: 7 residues within 4Å: Chain I: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.25 Ligand excluded by PLIP NO3.25: 8 residues within 4Å: Chain I: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.24 Ligand excluded by PLIP NO3.26: 7 residues within 4Å: Chain J: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.27 Ligand excluded by PLIP NO3.27: 8 residues within 4Å: Chain J: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.26 Ligand excluded by PLIP NO3.28: 7 residues within 4Å: Chain K: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.29 Ligand excluded by PLIP NO3.29: 8 residues within 4Å: Chain K: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.28 Ligand excluded by PLIP NO3.30: 7 residues within 4Å: Chain L: G.52, S.53, G.54, K.55, T.56, Q.57 Ligands: NO3.31 Ligand excluded by PLIP NO3.31: 8 residues within 4Å: Chain L: V.50, F.51, G.52, S.53, G.54, K.55, T.56 Ligands: NO3.30 Ligand excluded by PLIP

1 x 35N: Copper(II) tetrapyrrole(Non-functional Binders)

35N.18: 0 residues within 4Å: (No contacts) 0 PLIP interactions:

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rao, D.E.C.S. et al., Crystal Structure of an archaeal Rad51 homolog in complex with a phthalocyanine tetrasulfonate inhibitor. To be Published

Release Date

2015-06-10

Peptides

DNA repair and recombination protein RadA: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

DNA repair and recombination protein RadA

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