SMTL ID : 4ql1.2 (1 other biounit)

Crystal structure of human WDR5 in complex with compound OICR-9429

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x 35Q: N-(4-(4-methylpiperazin-1-yl)-3'-(morpholinomethyl)-[1,1'-biphenyl]-3-yl)-6-oxo-4-(trifluoromethyl)-1,6-dihydropyridine-3-carboxamide(Non-covalent)

35Q.1: 17 residues within 4Å: Chain A: A.25, S.27, S.28, A.43, G.67, I.68, S.69, D.70, D.85, F.111, P.151, S.153, Y.169, C.239, I.283, L.299 Ligands: UNX.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.43, A:F.111, A:F.111, A:P.151, A:Y.169 Hydrogen bonds: A:S.69, A:D.85 Water bridges: A:S.69, A:Y.169, A:Y.169 Salt bridges: A:D.70 pi-Stacking: A:F.111

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Y.238, D.280, V.281, L.299, E.300, N.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.238, A:N.301

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: K.30, N.114, K.199, F.241, N.243, A.286 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.30, A:N.114, A:K.199 Water bridges: A:V.29, A:N.114, A:T.285

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 3 residues within 4Å: Chain A: A.43, G.67 Ligands: 35Q.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grebien, F. et al., Pharmacological targeting of the Wdr5-MLL interaction in C/EBP alpha N-terminal leukemia. Nat.Chem.Biol. (2015)

Release Date

2014-12-17

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

WD repeat-containing protein 5

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