SMTL ID : 4qm1.1

Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor D67

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 20 residues within 4Å: Chain A: A.73, M.75, S.203, I.204, C.205, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: 39H.5 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.177, A:S.203, A:D.238, A:G.240, A:G.261, A:S.262, A:S.262, A:S.262, A:Y.285, A:M.288, A:G.289, A:S.290, A:E.313 Water bridges: A:G.239, A:I.241 IMP.3: 22 residues within 4Å: Chain B: A.73, M.75, N.177, G.202, S.203, I.204, C.205, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: 39H.2 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:N.177, B:K.196, B:S.203, B:G.240, B:I.241, B:G.261, B:S.262, B:S.262, B:M.288, B:G.289, B:E.313 Water bridges: B:G.239, B:G.239 IMP.7: 22 residues within 4Å: Chain C: A.73, M.75, N.177, G.202, S.203, I.204, C.205, D.238, G.239, G.240, M.259, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: 39H.6 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:N.177, C:K.196, C:K.196, C:S.203, C:G.240, C:G.261, C:S.262, C:Y.285, C:M.288, C:G.289, C:S.290, C:E.313 IMP.8: 20 residues within 4Å: Chain D: A.73, M.75, G.202, S.203, I.204, C.205, D.238, G.239, G.240, L.260, G.261, S.262, Y.285, G.287, M.288, G.289, S.290, E.313, G.314 Ligands: 39H.4 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.203, D:D.238, D:G.240, D:G.261, D:S.262, D:S.262, D:M.288, D:G.289, D:E.313

4 x 39H: 2-(3-methyl-4-oxo-3,4-dihydrophthalazin-1-yl)-N-(6,7,8,9-tetrahydrodibenzo[b,d]furan-2-yl)acetamide(Non-covalent)

39H.2: 14 residues within 4Å: Chain A: S.47, V.49, L.50, P.51, A.338, G.341, Y.342 Chain B: A.150, H.151, T.207, M.288, M.294, E.313 Ligands: IMP.3 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.50, A:Y.342, A:Y.342, B:A.150 Hydrogen bonds: B:E.313 39H.4: 12 residues within 4Å: Chain B: S.47, V.49, L.50, A.338, G.341, Y.342 Chain D: A.150, H.151, M.288, G.289, E.313 Ligands: IMP.8 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:L.50, B:Y.342, D:A.150 Hydrogen bonds: D:E.313 39H.5: 14 residues within 4Å: Chain A: A.150, S.154, M.288, G.289, M.294, E.313 Chain C: S.47, V.49, L.50, P.51, A.338, G.341, Y.342 Ligands: IMP.1 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:A.150, A:M.288, C:L.50, C:P.51, C:Y.342 Hydrogen bonds: A:E.313 39H.6: 13 residues within 4Å: Chain C: A.150, H.151, M.288, G.289, E.313 Chain D: S.47, V.49, L.50, P.51, A.338, G.341, Y.342 Ligands: IMP.7 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:M.288, D:L.50, D:A.338, D:Y.342 Hydrogen bonds: C:E.313, C:E.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor D67. To be Published (2014)

Release Date

2014-07-23

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Inosine-5'-monophosphate dehydrogenase

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