- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 2 residues within 4Å:- Chain A: N.153, N.227
No protein-ligand interaction detected (PLIP)NAG-NAG.7: 2 residues within 4Å:- Chain B: N.153, N.227
No protein-ligand interaction detected (PLIP)NAG-NAG.12: 2 residues within 4Å:- Chain C: N.153, N.227
No protein-ligand interaction detected (PLIP)NAG-NAG.17: 2 residues within 4Å:- Chain D: N.153, N.227
No protein-ligand interaction detected (PLIP)- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: D.212, G.216, D.243, P.266, G.267
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.212, A:G.216, A:D.243, H2O.3, H2O.6
CA.8: 5 residues within 4Å:- Chain B: D.212, G.216, D.243, P.266, G.267
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.212, B:G.216, B:D.243, H2O.12, H2O.15
CA.13: 5 residues within 4Å:- Chain C: D.212, G.216, D.243, P.266, G.267
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.212, C:G.216, C:D.243, H2O.21, H2O.23
CA.18: 5 residues within 4Å:- Chain D: D.212, G.216, D.243, P.266, G.267
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.212, D:G.216, D:D.243, H2O.30, H2O.32
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 4 residues within 4Å:- Chain A: N.119
- Chain C: V.375, G.376, S.377
2 PLIP interactions:2 interactions with chain C- Water bridges: C:V.375, C:S.377
NAG.9: 4 residues within 4Å:- Chain B: N.119
- Chain D: V.375, G.376, S.377
2 PLIP interactions:2 interactions with chain D- Water bridges: D:V.375, D:S.377
NAG.14: 4 residues within 4Å:- Chain B: V.375, G.376, S.377
- Chain C: N.119
2 PLIP interactions:2 interactions with chain B- Water bridges: B:V.375, B:S.377
NAG.19: 4 residues within 4Å:- Chain A: V.375, G.376, S.377
- Chain D: N.119
2 PLIP interactions:2 interactions with chain A- Water bridges: A:V.375, A:S.377
- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
G39.5: 14 residues within 4Å:- Chain A: R.36, E.37, D.69, R.70, W.97, I.141, R.143, A.165, E.195, E.196, R.211, N.213, R.290, Y.324
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:W.97, A:I.141, A:A.165
- Hydrogen bonds: A:E.37, A:D.69, A:R.70, A:Y.324
- Water bridges: A:R.74, A:R.74, A:E.196, A:R.211
- Salt bridges: A:R.36, A:R.211, A:R.290
G39.10: 14 residues within 4Å:- Chain B: R.36, E.37, D.69, R.70, W.97, I.141, R.143, A.165, E.195, E.196, R.211, N.213, R.290, Y.324
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:W.97, B:I.141, B:A.165
- Hydrogen bonds: B:E.37, B:D.69, B:R.70, B:Y.324
- Water bridges: B:R.74, B:R.74, B:E.196, B:R.211
- Salt bridges: B:R.36, B:R.211, B:R.290
G39.15: 14 residues within 4Å:- Chain C: R.36, E.37, D.69, R.70, W.97, I.141, R.143, A.165, E.195, E.196, R.211, N.213, R.290, Y.324
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:W.97, C:I.141, C:A.165
- Hydrogen bonds: C:E.37, C:D.69, C:R.70, C:Y.324
- Water bridges: C:R.74, C:R.74, C:E.196, C:R.211
- Salt bridges: C:R.36, C:R.211, C:R.290
G39.20: 14 residues within 4Å:- Chain D: R.36, E.37, D.69, R.70, W.97, I.141, R.143, A.165, E.195, E.196, R.211, N.213, R.290, Y.324
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:W.97, D:I.141, D:A.165
- Hydrogen bonds: D:E.37, D:D.69, D:R.70, D:Y.324
- Water bridges: D:R.74, D:R.74, D:E.196, D:R.211
- Salt bridges: D:R.36, D:R.211, D:R.290
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sun, X. et al., Structure of influenza virus N7: the last piece of the neuraminidase "jigsaw" puzzle. J.Virol. (2014)
- Release Date
- 2014-07-30
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x G39: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sun, X. et al., Structure of influenza virus N7: the last piece of the neuraminidase "jigsaw" puzzle. J.Virol. (2014)
- Release Date
- 2014-07-30
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A