SMTL ID : 4qni.1 (1 other biounit)

Crystal structure of an auxiliary nutrient binding protein (BT3507) from Bacteroides thetaiotaomicron VPI-5482 at 2.30 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: A.102, S.105 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: A.102, S.105 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain C: A.102, S.105 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain D: A.102, S.105 Ligand excluded by PLIP

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 5 residues within 4Å: Chain A: G.241, E.242, T.243, N.244 Ligands: EDO.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.242 Hydrogen bonds: A:E.242, A:T.243, A:N.244, A:N.244 CIT.11: 5 residues within 4Å: Chain B: G.241, E.242, T.243, N.244 Ligands: EDO.16 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:E.242 Hydrogen bonds: B:E.242, B:T.243, B:N.244, B:N.244 CIT.20: 5 residues within 4Å: Chain C: G.241, E.242, T.243, N.244 Ligands: EDO.25 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:E.242 Hydrogen bonds: C:E.242, C:T.243, C:N.244, C:N.244 CIT.29: 5 residues within 4Å: Chain D: G.241, E.242, T.243, N.244 Ligands: EDO.34 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:E.242 Hydrogen bonds: D:E.242, D:T.243, D:N.244, D:N.244

28 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: S.205, R.207, Y.209, D.224, E.225 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: I.180, I.206, T.218, G.221, F.237, Y.294, V.310 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: D.170, R.285, V.287, R.318 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: N.129, I.130, D.131, I.211, F.217, K.234 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: N.240, N.244, G.245 Ligands: CIT.2 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: Y.31, S.32, H.34, F.168, N.169, E.213 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: Y.28, G.173, D.174, L.316, S.317, W.333 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain B: S.205, R.207, Y.209, D.224, E.225 Ligand excluded by PLIP EDO.13: 7 residues within 4Å: Chain B: I.180, I.206, T.218, G.221, F.237, Y.294, V.310 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain B: D.170, R.285, V.287, R.318 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain B: N.129, I.130, D.131, I.211, F.217, K.234 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain B: N.240, N.244, G.245 Ligands: CIT.11 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: Y.31, S.32, H.34, F.168, N.169, E.213 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain B: Y.28, G.173, D.174, L.316, S.317, W.333 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain C: S.205, R.207, Y.209, D.224, E.225 Ligand excluded by PLIP EDO.22: 7 residues within 4Å: Chain C: I.180, I.206, T.218, G.221, F.237, Y.294, V.310 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain C: D.170, R.285, V.287, R.318 Ligand excluded by PLIP EDO.24: 6 residues within 4Å: Chain C: N.129, I.130, D.131, I.211, F.217, K.234 Ligand excluded by PLIP EDO.25: 4 residues within 4Å: Chain C: N.240, N.244, G.245 Ligands: CIT.20 Ligand excluded by PLIP EDO.26: 6 residues within 4Å: Chain C: Y.31, S.32, H.34, F.168, N.169, E.213 Ligand excluded by PLIP EDO.27: 6 residues within 4Å: Chain C: Y.28, G.173, D.174, L.316, S.317, W.333 Ligand excluded by PLIP EDO.30: 5 residues within 4Å: Chain D: S.205, R.207, Y.209, D.224, E.225 Ligand excluded by PLIP EDO.31: 7 residues within 4Å: Chain D: I.180, I.206, T.218, G.221, F.237, Y.294, V.310 Ligand excluded by PLIP EDO.32: 4 residues within 4Å: Chain D: D.170, R.285, V.287, R.318 Ligand excluded by PLIP EDO.33: 6 residues within 4Å: Chain D: N.129, I.130, D.131, I.211, F.217, K.234 Ligand excluded by PLIP EDO.34: 4 residues within 4Å: Chain D: N.240, N.244, G.245 Ligands: CIT.29 Ligand excluded by PLIP EDO.35: 6 residues within 4Å: Chain D: Y.31, S.32, H.34, F.168, N.169, E.213 Ligand excluded by PLIP EDO.36: 6 residues within 4Å: Chain D: Y.28, G.173, D.174, L.316, S.317, W.333 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a hypothetical protein (BT3507) from Bacteroides thetaiotaomicron VPI-5482 at 2.30 A resolution. To be published

Release Date

2014-08-13

Peptides

Uncharacterized protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Uncharacterized protein

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