SMTL ID : 4qpl.1 (1 other biounit)

Crystal structure of RNF146(RING-WWE)/UbcH5a/iso-ADPr complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x V3L: 2'-O-(5-O-phosphono-alpha-D-ribofuranosyl)adenosine 5'-(dihydrogen phosphate)(Non-covalent)

V3L.1: 16 residues within 4Å: Chain A: L.30, K.33, Y.79, G.81, R.82, W.86, Y.88, I.111, Y.116, Q.125, R.127, R.133, R.135, K.147, A.150, G.151 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:K.33, A:Y.79, A:Y.79, A:R.82, A:Y.116, A:Q.125, A:Q.125 Water bridges: A:K.33, A:R.133, A:R.134, A:R.135, A:R.135, A:R.135, A:K.147, A:A.150, A:R.153 Salt bridges: A:K.33, A:R.82, A:R.127, A:R.133, A:R.135, A:R.135, A:R.135, A:K.147

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.8, C.11, C.28, C.31 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.11, A:C.28, A:C.31 ZN.3: 4 residues within 4Å: Chain A: C.23, H.25, C.42, C.45 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.23, A:H.25, A:C.42, A:C.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DaRosa, P.A. et al., Allosteric activation of the RNF146 ubiquitin ligase by a poly(ADP-ribosyl)ation signal. Nature (2015)

Release Date

2014-10-15

Peptides

E3 ubiquitin-protein ligase RNF146: A
Ubiquitin-conjugating enzyme E2 D1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase RNF146

Ubiquitin-conjugating enzyme E2 D1

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