- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)
- 5 x L2P: 2,3-DI-PHYTANYL-GLYCEROL(Non-covalent)
L2P.4: 10 residues within 4Å:- Chain A: V.77, A.80, L.89, T.90, W.121, L.129
- Chain C: T.154, V.161, T.162
- Ligands: L2P.14
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: A:L.89, A:L.89, A:T.90, A:W.121, A:L.129, C:T.154, C:V.161, C:T.162
L2P.7: 8 residues within 4Å:- Chain A: F.150
- Chain B: L.66, A.128, L.129, P.132, M.133, I.157
- Ligands: L2P.8
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.66, B:L.129, B:P.132, B:I.157, A:F.150, A:F.150
L2P.8: 6 residues within 4Å:- Chain B: A.146, F.150, I.153, I.157
- Ligands: L2P.7, L2P.9
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.150, B:I.153, B:I.157
L2P.9: 11 residues within 4Å:- Chain B: T.154, V.161, T.162, A.165, L.168
- Chain C: V.77, A.80, L.89, T.90, L.129
- Ligands: L2P.8
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain C- Hydrophobic interactions: B:V.161, B:T.162, B:A.165, B:L.168, C:V.77, C:L.89, C:T.90, C:L.129
L2P.14: 10 residues within 4Å:- Chain A: L.66, L.129, M.133, L.136, S.144, N.145, A.146
- Chain C: F.150, T.154
- Ligands: L2P.4
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: A:L.66, A:L.129, A:L.136, C:F.150, C:F.150, C:T.154
- 3 x RET: RETINAL(Covalent)
RET.5: 15 residues within 4Å:- Chain A: W.127, S.130, T.131, M.159, G.163, Y.180, S.183, C.184, F.187, W.222, Y.225, P.226, W.229, D.252, K.256
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:W.127, A:W.127, A:T.131, A:Y.180, A:Y.180, A:F.187, A:F.187, A:W.222, A:W.222, A:Y.225, A:Y.225, A:Y.225, A:Y.225, A:Y.225, A:P.226, A:W.229, A:K.256
RET.11: 16 residues within 4Å:- Chain B: W.127, S.130, T.131, I.134, M.159, G.163, Y.180, S.183, F.187, W.222, Y.225, P.226, W.229, D.252, A.255, K.256
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:W.127, B:W.127, B:T.131, B:I.134, B:Y.180, B:Y.180, B:F.187, B:W.222, B:Y.225, B:Y.225, B:Y.225, B:Y.225, B:P.226, B:W.229, B:A.255, B:K.256
RET.15: 15 residues within 4Å:- Chain C: W.127, S.130, T.131, I.134, M.159, G.163, Y.180, S.183, C.184, F.187, W.222, Y.225, P.226, W.229, K.256
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:W.127, C:T.131, C:I.134, C:Y.180, C:F.187, C:F.187, C:W.222, C:W.222, C:Y.225, C:Y.225, C:Y.225, C:Y.225, C:P.226, C:W.229, C:K.256
- 6 x BR: BROMIDE ION(Non-covalent)
BR.6: 5 residues within 4Å:- Chain A: S.81, T.126, W.127, S.130, K.256
Ligand excluded by PLIPBR.10: 4 residues within 4Å:- Chain A: N.145, K.148
- Chain B: P.62, K.65
Ligand excluded by PLIPBR.12: 6 residues within 4Å:- Chain B: V.77, S.81, T.126, W.127, S.130, K.256
Ligand excluded by PLIPBR.13: 5 residues within 4Å:- Chain B: N.145, T.147, K.148
- Chain C: P.62, K.65
Ligand excluded by PLIPBR.16: 5 residues within 4Å:- Chain C: S.81, T.126, W.127, S.130, K.256
Ligand excluded by PLIPBR.17: 4 residues within 4Å:- Chain A: P.62, K.65
- Chain C: N.145, K.148
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kouyama, T. et al., Crystal Structures of the L1, L2, N, and O States of pharaonis Halorhodopsin. Biophys.J. (2015)
- Release Date
- 2015-06-17
- Peptides
- Halorhodopsin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
G - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)
- 5 x L2P: 2,3-DI-PHYTANYL-GLYCEROL(Non-covalent)
- 3 x RET: RETINAL(Covalent)
- 6 x BR: BROMIDE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kouyama, T. et al., Crystal Structures of the L1, L2, N, and O States of pharaonis Halorhodopsin. Biophys.J. (2015)
- Release Date
- 2015-06-17
- Peptides
- Halorhodopsin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
G - Membrane
-
We predict this structure to be a membrane protein.