SMTL ID : 4qs6.1

CRYSTAL STRUCTURE of 5-CARBOXYVANILLATE DECARBOXYLASE LIGW2 FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 (TARGET EFI-505250) WITH BOUND 4-HYDROXY-3-METHOXY-5-NITROBENZOIC ACID, NO METAL, THE D314N MUTANT

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: Y.277, Q.280, A.281, R.284 Chain B: R.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.280, A:A.281 GOL.5: 5 residues within 4Å: Chain B: D.63, Q.184, G.185, P.215, D.216 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.63, B:D.216, B:D.216 Water bridges: B:K.64, B:Q.184, B:Q.184, B:D.216, B:S.217 GOL.6: 6 residues within 4Å: Chain B: D.329, K.361, T.365, N.366, K.369, W.370 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.365, B:T.365, B:W.370 Water bridges: B:D.329, B:K.369

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.284 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: D.63, P.215, D.216 Ligand excluded by PLIP

2 x 1DF: 4-hydroxy-3-methoxy-5-nitrobenzoic acid(Non-covalent)

1DF.4: 14 residues within 4Å: Chain A: E.41, L.69, Y.73, R.80, T.112, S.113, H.210, A.230, F.234, H.263, N.336, Y.339 Chain B: R.274, M.278 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.339 Hydrogen bonds: A:Y.73, A:T.112, A:N.336 Water bridges: A:R.80, A:S.113, A:A.230, B:R.287, B:R.287 Salt bridges: A:R.80 pi-Stacking: A:F.234, A:Y.339 1DF.7: 13 residues within 4Å: Chain A: R.274, M.278 Chain B: E.41, L.69, Y.73, T.112, S.113, H.210, A.230, F.234, H.263, N.336, Y.339 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:A.230, B:Y.339 Hydrogen bonds: B:Y.73, B:N.336, A:R.287 Water bridges: B:R.80, B:S.113, B:A.230, B:N.336, A:R.287 pi-Stacking: B:F.234, B:Y.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Ligw2 Decarboxylase from Novosphingobium Aromaticivorans. To be Published

Release Date

2014-08-06

Peptides

Ligw2 Decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ligw2 Decarboxylase

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