SMTL ID : 4qu3.1 (1 other biounit)

GES-2 ertapenem acyl-enzyme complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x 1RG: (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid(Covalent)

1RG.1: 16 residues within 4Å: Chain A: C.63, S.64, K.67, W.99, S.125, N.127, E.161, N.165, Q.210, T.211, A.214, K.229, T.230, G.231, T.232, R.238 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.64, A:K.67, A:S.125, A:S.125, A:N.127, A:N.165, A:N.165, A:Q.210, A:T.232, A:T.232 Water bridges: A:T.230, A:R.238 Salt bridges: A:K.229, A:R.238

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: G.92, P.93, D.94 Ligands: IOD.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.94

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 1 residues within 4Å: Chain A: Q.210 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: P.101, R.105 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Ligands: CA.2 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: R.204, I.207 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stewart, N.K. et al., Kinetic and Structural Requirements for Carbapenemase Activity in GES-Type beta-Lactamases. Biochemistry (2015)

Release Date

2014-12-31

Peptides

Beta-lactamase GES-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase GES-2

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