- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x FE: FE (III) ION(Non-covalent)
FE.2: 5 residues within 4Å:- Chain A: N.221, H.227, H.232, D.383
- Ligands: 3BY.3
5 PLIP interactions:3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: A:H.227, A:H.232, A:D.383, 3BY.3, H2O.8
FE.8: 5 residues within 4Å:- Chain B: N.221, H.227, H.232, D.383
- Ligands: 3BY.9
5 PLIP interactions:3 interactions with chain B, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: B:H.227, B:H.232, B:D.383, 3BY.9, H2O.18
FE.14: 5 residues within 4Å:- Chain C: N.221, H.227, H.232, D.383
- Ligands: 3BY.15
5 PLIP interactions:3 interactions with chain C, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: C:H.227, C:H.232, C:D.383, 3BY.15, H2O.28
- 3 x 3BY: 1-methyl-L-proline(Non-covalent)
3BY.3: 12 residues within 4Å:- Chain A: N.222, E.224, C.225, H.227, C.228, H.232, L.235, F.239, W.376, T.379, D.383
- Ligands: FE.2
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.239, A:W.376
- Water bridges: A:N.221, A:N.222
- Salt bridges: A:H.227, A:H.232
3BY.9: 12 residues within 4Å:- Chain B: N.222, E.224, C.225, H.227, C.228, H.232, L.235, F.239, W.376, T.379, D.383
- Ligands: FE.8
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.239, B:W.376
- Water bridges: B:N.221, B:N.222
- Salt bridges: B:H.227, B:H.232
3BY.15: 12 residues within 4Å:- Chain C: N.222, E.224, C.225, H.227, C.228, H.232, L.235, F.239, W.376, T.379, D.383
- Ligands: FE.14
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:F.239, C:W.376
- Water bridges: C:N.221, C:N.222
- Salt bridges: C:H.227, C:H.232
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.4: 6 residues within 4Å:- Chain A: R.37, R.38, L.39, F.42, E.45, P.401
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.37, A:L.39, A:L.39
TRS.10: 6 residues within 4Å:- Chain B: R.37, R.38, L.39, F.42, E.45, P.401
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.37, B:L.39, B:L.39
TRS.16: 6 residues within 4Å:- Chain C: R.37, R.38, L.39, F.42, E.45, P.401
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.37, C:L.39, C:L.39
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 5 residues within 4Å:- Chain A: T.84, L.85, R.86, E.91, K.118
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.84, A:T.84, A:R.86, A:R.86, A:K.118
- Water bridges: A:L.85, A:R.86
GOL.11: 5 residues within 4Å:- Chain B: T.84, L.85, R.86, E.91, K.118
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:T.84, B:T.84, B:R.86, B:R.86, B:K.118
- Water bridges: B:L.85, B:R.86
GOL.17: 5 residues within 4Å:- Chain C: T.84, L.85, R.86, E.91, K.118
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:T.84, C:T.84, C:R.86, C:R.86, C:K.118
- Water bridges: C:L.85, C:R.86
- 3 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
NCO.6: 3 residues within 4Å:- Chain A: L.35, D.36, R.38
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:D.36, A:R.38, A:R.38, A:R.38
- Water bridges: A:L.35, A:D.36, A:R.38, A:E.424, A:E.424, A:E.424
NCO.12: 3 residues within 4Å:- Chain B: L.35, D.36, R.38
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:D.36, B:R.38, B:R.38, B:R.38
- Water bridges: B:L.35, B:D.36, B:R.38, B:E.424, B:E.424, B:E.424
NCO.18: 3 residues within 4Å:- Chain C: L.35, D.36, R.38
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:D.36, C:R.38, C:R.38, C:R.38
- Water bridges: C:L.35, C:D.36, C:R.38, C:E.424, C:E.424, C:E.424
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Agarwal, R. et al., Tracking photoelectron induced in-crystallo enzyme catalysis. To be Published
- Release Date
- 2015-07-15
- Peptides
- Monoxygenase; demethylase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x FE: FE (III) ION(Non-covalent)
- 3 x 3BY: 1-methyl-L-proline(Non-covalent)
- 3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 3 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Agarwal, R. et al., Tracking photoelectron induced in-crystallo enzyme catalysis. To be Published
- Release Date
- 2015-07-15
- Peptides
- Monoxygenase; demethylase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A