SMTL ID : 4quz.1

Crystal structure of Feline Norovirus P Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: V.137, R.179, E.200, P.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.179, A:R.179 EDO.2: 6 residues within 4Å: Chain B: L.48, L.49, G.50, T.52, Q.125, L.129 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.52 Water bridges: B:L.48 EDO.3: 3 residues within 4Å: Chain B: Y.157, R.179, E.200 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.179, B:R.179 EDO.4: 4 residues within 4Å: Chain A: L.153 Chain B: G.140, D.155, I.197 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.140 EDO.5: 4 residues within 4Å: Chain B: N.223, H.224, D.225, L.226 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.225, B:L.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, B.K. et al., Structural analysis of a feline norovirus protruding domain. Virology (2015)

Release Date

2014-11-19

Peptides

VP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VP1

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