SMTL ID : 4qwt.2 (3 other biounits)

Anaerobic crystal structure of delta413-417:GS LOX in complex with arachidonate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.387, H.392, H.573, N.577, I.696 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.387, A:H.392, A:H.573, H2O.14

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: H.20, G.22, D.82, D.84 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.20, A:G.22, A:D.82, A:D.82, A:D.84, H2O.12

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: F.235, Q.238, F.239, E.378, N.589 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.583 ACT.4: 4 residues within 4Å: Chain A: F.633, Y.639, E.688, R.689 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.689 ACT.5: 6 residues within 4Å: Chain A: L.192, G.195, S.196, T.199, L.213, A.621 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.213 ACT.6: 4 residues within 4Å: Chain A: H.164, S.178, Y.181, Q.182 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.164 Hydrogen bonds: A:Q.182 Salt bridges: A:H.164

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: G.506, I.509, A.510, R.555, E.556, K.559 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.559, A:K.559 Water bridges: A:E.556 GOL.8: 6 residues within 4Å: Chain A: V.291, F.381, N.385, R.390, C.459, E.462 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.385, A:R.390, A:R.390, A:C.459 GOL.10: 3 residues within 4Å: Chain A: A.25, D.44, G.46 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.25, A:D.44, A:G.46, A:G.46 GOL.11: 6 residues within 4Å: Chain A: E.202, N.203, W.204, D.205, S.206, D.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.202, A:D.205, A:S.206 GOL.12: 2 residues within 4Å: Chain A: D.662, E.665 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.662 Water bridges: A:D.662

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 6 residues within 4Å: Chain A: E.119, A.120, K.414, W.648, E.649, D.650 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neau, D.B. et al., Crystal Structure of a Lipoxygenase in Complex with Substrate: THE ARACHIDONIC ACID-BINDING SITE OF 8R-LIPOXYGENASE. J.Biol.Chem. (2014)

Release Date

2014-09-24

Peptides

Allene oxide synthase-lipoxygenase protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Allene oxide synthase-lipoxygenase protein

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