SMTL ID : 4qy1.1 (3 other biounits)

Structure of H10 from human-infecting H10N8 in complex with avian receptor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain E: N.28, T.30, T.311 Chain F: L.52 No protein-ligand interaction detected (PLIP)

1 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-GAL-SIA.2: 11 residues within 4Å: Chain E: Y.88, T.126, T.127, R.128, W.144, H.176, E.183, L.187, G.218, Q.219, G.221 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:Q.219, E:Q.219, E:Y.88, E:T.126, E:T.127, E:R.128, E:H.176, E:Q.219, E:Q.219 Water bridges: E:S.179, E:S.179, E:E.183, E:T.126, E:T.126, E:G.221 Hydrophobic interactions: E:W.144

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: G.233, D.234, N.235 Chain E: P.214 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.233, A:N.235 NAG.4: 5 residues within 4Å: Chain B: H.75, G.78, N.79, N.82 Chain C: E.104 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.82 NAG.5: 5 residues within 4Å: Chain A: P.214 Chain C: R.162, G.233, D.234, N.235 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.162, C:G.233, C:N.235 NAG.6: 5 residues within 4Å: Chain D: H.75, G.78, N.79, N.82 Chain E: E.104 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain E Hydrogen bonds: D:N.82 Water bridges: D:G.78, E:E.104, E:E.104, E:E.104 NAG.7: 6 residues within 4Å: Chain C: P.214 Chain E: R.162, S.200, G.233, D.234, N.235 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:G.233 NAG.8: 3 residues within 4Å: Chain E: N.12, T.14, N.28 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.14 NAG.9: 4 residues within 4Å: Chain A: E.104 Chain F: H.75, N.79, N.82 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, M. et al., Structural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus. Nat Commun (2015)

Release Date

2015-01-28

Peptides

hemagglutinin: ACE
hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

hemagglutinin

hemagglutinin

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